Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_014900.1 Length=40986 Score E Sequences producing significant alignments: (Bits) Value seq493 149 2e-31 >seq493 Length=52014 Score = 149 bits (164), Expect = 2e-31 Identities = 91/97 (94%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 5928 GCAGCTTCCCTACCGTAAGAGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATT 5987 |||| |||||||| || || |||||||||||||||||||||||||||||||||||||||| Sbjct 48157 GCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATT 48216 Query 5988 GCTGGTTTCTTTCCCGTTCATCCAGTAGTGCCAGCAC 6024 ||||||||||||||||||||||||| ||| ||||||| Sbjct 48217 GCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 48253 Score = 149 bits (164), Expect = 2e-31 Identities = 91/97 (94%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 5928 GCAGCTTCCCTACCGTAAGAGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATT 5987 |||| |||||||| || || |||||||||||||||||||||||||||||||||||||||| Sbjct 50937 GCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATT 50996 Query 5988 GCTGGTTTCTTTCCCGTTCATCCAGTAGTGCCAGCAC 6024 ||||||||||||||||||||||||| ||| ||||||| Sbjct 50997 GCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 51033 Score = 107 bits (118), Expect = 5e-19 Identities = 65/69 (94%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 4641 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCATATGaaaaaaaTCCCCGCGAGTGCGAG 4700 ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| Sbjct 47259 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGTGCGAG 47318 Query 4701 GTTTGTTAT 4709 | ||||||| Sbjct 47319 GATTGTTAT 47327 Score = 107 bits (118), Expect = 5e-19 Identities = 65/69 (94%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 4641 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCATATGaaaaaaaTCCCCGCGAGTGCGAG 4700 ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| Sbjct 50039 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGTGCGAG 50098 Query 4701 GTTTGTTAT 4709 | ||||||| Sbjct 50099 GATTGTTAT 50107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131032460990432