Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 3e-12 seq2 87.8 3e-12 seq318 84.2 3e-11 >seq3 Length=4400433 Score = 87.8 bits (96), Expect = 3e-12 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 112288 GGATGTGGTGAAATTGGCAGACACACCAGATTTAGGTTCTGGCGCTTATA-GCGTGACGG 112346 |||||||| |||||||| |||| |||||||||||||||||||||| | ||||| || Sbjct 3471666 GGATGTGGCGAAATTGGTAGACGCACCAGATTTAGGTTCTGGCGCCGCGAGGCGTGGGGG 3471725 Query 112347 TTCGAGTCCGTCCATCCCCACCA 112369 ||| ||||| ||||||| ||||| Sbjct 3471726 TTCAAGTCCCTCCATCCGCACCA 3471748 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/119 (76%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 113784 GTCTGGGGTTCAAGTCCTCATGGGCCTGCCA---AGTTTGGGGGATTAGCTCAGTTGGAA 113840 ||| | ||||||||||||| | |||| ||| || |||| ||||||||| ||| | Sbjct 2142190 GTCGGAGGTTCAAGTCCTCCTCGGCCCACCACCCTTTTCGGGGCCTTAGCTCAGCTGGGA 2142249 Query 113841 TGAGCGACTGGTTTGCAACCAGTAGGTCATCGGTTCGACCCCGATATCCTCCACCAATT 113899 ||||| ||| |||||| ||| |||||| |||||||| |||| || |||||||| || Sbjct 2142250 -GAGCGCCTGATTTGCATTCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCATTT 2142307 >seq2 Length=6328565 Score = 87.8 bits (96), Expect = 3e-12 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 112288 GGATGTGGTGAAATTGGCAGACACACCAGATTTAGGTTCTGGCG-CTTATAGCGTGACGG 112346 ||||||||||||||||| |||||| ||||||||||||||||| | | | ||||| || Sbjct 3326227 GGATGTGGTGAAATTGGTAGACACGCCAGATTTAGGTTCTGGTGCCGCAAGGCGTGGGGG 3326168 Query 112347 TTCGAGTCCGTCCATCCCCACCA 112369 ||| ||||| ||||||| ||||| Sbjct 3326167 TTCAAGTCCCTCCATCCGCACCA 3326145 >seq318 Length=132058 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 112473 TTTATGCGGGTGTAGCTCAGTTGGTAGAGCTTCTGATTTCCAATCAGAATGTCGCGTGTT 112532 |||| |||||| ||||||||| |||||||| ||| || |||| ||||||||||| ||| Sbjct 69183 TTTAGGCGGGTATAGCTCAGT-GGTAGAGCATCTCGTTGCCAACGAGAATGTCGCGCGTT 69241 Query 112533 CGAGTCACGTTACCCGCT 112550 ||| || ||||||||||| Sbjct 69242 CGAATCGCGTTACCCGCT 69259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752597913666080