Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq318 753 0.0 seq60 666 0.0 >seq318 Length=132058 Score = 753 bits (834), Expect = 0.0 Identities = 762/992 (77%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| |||||| | ||||||||| | ||| | || || | |||||||||||||| | Sbjct 95138 TTCTGTGAATGGATTACAAGCACTGAGAACCGTCTATACATCGGTTGGTTCGGTGTTCTT 95079 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 |||||||| | ||||||| ||| | | ||||||| | || ||||| ||||| || Sbjct 95078 ATGATCCCTACTCTATTAACTGCAACTTCTGTTTTCATTATCGCTTTTATCGCTGCTCCT 95019 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || || ||||| || ||| | || |||||| | ||| |||| | || ||||||||| Sbjct 95018 CCAGTGGACATCGATGGTATCCGTGAGCCTGTATCTGGTTCTCTTCTTTACGGAAACAAC 94959 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 |||||||| ||||| ||||| ||| |||| ||||| |||||||||||||||||||||||| Sbjct 94958 ATCATCTCTGGTGCTGTTGTACCAACTTCTAACGCGATCGGTCTACACTTCTACCCAATT 94899 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||| ||| | | ||||| ||| | || || |||||||||||||| | | | Sbjct 94898 TGGGAAGCTGCTTCTCTTGATGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTT 94839 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850 | ||||||| | | ||||||| | ||||||||| | | |||||| | || | | | Sbjct 94838 TGCCACTTCTTCCTTGGAATCTGCTCATACATGGGTCGTGAATGGGAACTTTCTTTCCGT 94779 Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 |||||||| | ||||||||| ||| ||||| || |||||||| | || || ||| Sbjct 94778 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 94719 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 |||||| | | |||||| | ||||| ||||||||||| |||||||||||||| || || Sbjct 94718 GTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTTGGTATC 94659 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||||| ||||||||||||||| ||||||||||||| ||||||||||| |||||||| || Sbjct 94658 TCTGGTACATTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCA 94599 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 ||||| ||| ||| || || ||| | |||||||| || | ||||| || ||||| ||| Sbjct 94598 TTCCACATGCTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTGTTCTCTGCTATGCACGGT 94539 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 ||||| || || || ||||||||| | || ||||||||| | ||||| ||| |||| Sbjct 94538 TCACTAGTTACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCAGCTAACGCTGGT 94479 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 |||||||||||||| ||||||||||| || || ||||| || || || || ||||| ||| Sbjct 94478 TACAAGTTCGGTCAGGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTACTTTGGT 94419 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270 | |||||||||| || || |||||||||||| | |||||||||||||||||| Sbjct 94418 CGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCTCTTCACTTCTTCCTAGCT 94359 Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330 | | |||||| | || | ||||| || || | ||||| | ||| |||||||||||| Sbjct 94358 GCTTGGCCAGTTATCGGTATTTGGTTTACTGCTCTTGGTATTTCTACTATGGCATTCAAC 94299 Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390 | |||||||| ||||| ||||||||||| || ||| | || | || || Sbjct 94298 CTAAACGGATTCAACTTCAACCAATCAGTAGTTGATTCACAAGGACGTGTTATCAACACT 94239 Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 |||||||| | | ||| | || ||||||||||||||||| ||||| |||||||||||| Sbjct 94238 TGGGGTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCACGAGCGTAACGCT 94179 Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 |||||||||||||| ||| | || || | ||| Sbjct 94178 CACAACTTCCCACTTGACCTTGCGTCAGTTGA 94147 >seq60 Length=599436 Score = 666 bits (738), Expect = 0.0 Identities = 718/948 (76%), Gaps = 2/948 (0%) Strand=Plus/Minus Query 168531 TTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTG 168590 |||||||||| ||| ||||||||||| |||||||||||||| | |||| ||| Sbjct 100556 TTGGTTGGTTTGGTTGTTTAATGATCCCTACGTTATTAACAGCAGCTTCTTGTTACATCA 100497 Query 168591 TTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTG 168650 | || ||||| || || || ||||| ||||| || || ||| | || |||||||| || Sbjct 100496 TCGCTTTTATCGCAGCTCCGCCTGTAGATATTGATGGTATCCGTGAGCCTGTAGCTGGAT 100437 Query 168651 CTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCG 168710 || || | || || |||||||||||| ||||| ||| | || |||||||||||||| Sbjct 100436 CTTTATTATACGGTAACAACATCATCAGTGGTGCTGTTATACCTAGTTCAAACGCAATCG 100377 Query 168711 GTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTG 168770 || | ||||||||||||||||||||||| ||| |||| || ||||||||||| || |||| Sbjct 100376 GTATTCACTTCTACCCAATTTGGGAAGCTGCTTCAATTGAAGAGTGGTTATACAACGGTG 100317 Query 168771 GTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGAC 168830 |||||||||| || | | ||||| ||| |||| || | || | |||||| | Sbjct 100316 GTCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGTTGCTTGTTGGATGGGTCGTG 100257 Query 168831 AGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCA 168889 | |||||| ||| | ||| | |||||||| | |||||||| | || || | || || Sbjct 100256 AATGGGAACTTAGC-TACCGTTTAGGTATGCGTCCTTGGATTTTCGTAGCATTCTCTGCT 100198 Query 168890 CCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCT 168949 |||||| | ||||||| |||||||||| | || ||||| | ||||| ||| ||||||| Sbjct 100197 CCAGTAGCAGCAGCATCTGCAGTATTCTTAGTTTACCCTATCGGTCAAGGTAGTTTCTCT 100138 Query 168950 GATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAG 169009 ||||||||||| |||| |||||||| || || ||||||||| |||| |||||||| || Sbjct 100137 GATGGTATGCCATTAGGTATTTCTGGTACGTTTAACTTCATGATCGTTTTCCAAGCTGAA 100078 Query 169010 CACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCT 169069 || |||||| | ||||| || ||||||||||| || || || ||| | |||||||| || Sbjct 100077 CATAACATTTTAATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTTTTCGGTGGTTCA 100018 Query 169070 CTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAG 169129 ||||| || ||||| || || | ||||| || | |||| | || || | || Sbjct 100017 TTATTCAGTGCTATGCACGGATCTTTAGTAACTTCAAGTTTAATTCGTGAAACAAGCGAA 99958 Query 169130 GAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTT 169189 | |||||| ||||| |||||||| ||||| |||||||||||||| || || || || Sbjct 99957 GTTGAATCTGTTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTA 99898 Query 169190 GCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGA 169249 || || ||||| ||||| ||| | ||||| ||||| ||||| |||||||||||||| ||| Sbjct 99897 GCTGCTCATGGTTACTTTGGTCGTTTAATTTTCCAATATGCTAGTTTCAACAACTCTAGA 99838 Query 169250 AGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGT 169309 | | || |||||||| |||| | || || || | | |||||||| || | ||| Sbjct 99837 GCTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTGGGATTTGGTTAACAGCTTTAGGT 99778 Query 169310 ATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTT 169369 | |||| |||||||||||||| ||||| |||||||| |||||||| ||||| ||| | Sbjct 99777 GTAAGTACTATGGCATTCAACTTAAACGGTTTTAACTTCAACCAATCTGTTGTTGATAGT 99718 Query 169370 AACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAA 169429 | ||| | || ||||||| |||| | ||||| | ||| | | ||||||||| Sbjct 99717 GAAGGTCGTGTTATAAACACATGGGCTGACATCATTAACCGTGCAGATTTAGGTATGGAA 99658 Query 169430 GTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCT 169477 |||||||| || ||||||||||| ||||||||| |||| ||||||||| Sbjct 99657 GTAATGCACGAACGTAACGCTCATAACTTCCCATTAGATTTAGCATCT 99610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564436435359360