Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq318 794 0.0 seq60 679 0.0 >seq318 Length=132058 Score = 794 bits (880), Expect = 0.0 Identities = 763/978 (78%), Gaps = 0/978 (0%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || ||||| ||| |||| ||||| || ||| | ||| | |||||||| ||||| || Sbjct 95138 TTCTGTGAATGGATTACAAGCACTGAGAACCGTCTATACATCGGTTGGTTCGGTGTTCTT 95079 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| ||| || | | || || || |||||| | || || |||||||| ||| Sbjct 95078 ATGATCCCTACTCTATTAACTGCAACTTCTGTTTTCATTATCGCTTTTATCGCTGCTCCT 95019 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || || ||||| || ||| | ||||| || |||||||| | | || || |||||| Sbjct 95018 CCAGTGGACATCGATGGTATCCGTGAGCCTGTATCTGGTTCTCTTCTTTACGGAAACAAC 94959 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 ||||||||||||||||||||||| | ||| ||||| ||||| ||||||||||||| || Sbjct 94958 ATCATCTCTGGTGCTGTTGTACCAACTTCTAACGCGATCGGTCTACACTTCTACCCAATT 94899 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| || | |||| |||||||| ||||| ||||| |||| |||||| | | Sbjct 94898 TGGGAAGCTGCTTCTCTTGATGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTT 94839 Query 215594 TTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGA 215653 | ||||||| || |||| || | ||||| || | | ||||||||||||| | | Sbjct 94838 TGCCACTTCTTCCTTGGAATCTGCTCATACATGGGTCGTGAATGGGAACTTTCTTTCCGT 94779 Query 215654 TTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCA 215713 ||||||||| | ||||||||| ||| |||||||| ||||| || | ||||| ||| Sbjct 94778 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 94719 Query 215714 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATC 215773 |||||| | | || ||| ||||||| ||||||||||| |||| |||||| ||||| ||| Sbjct 94718 GTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTTGGTATC 94659 Query 215774 TCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCA 215833 ||||| |||||||||| |||| | || ||||| |||||||||||||| || ||||||||| Sbjct 94658 TCTGGTACATTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCA 94599 Query 215834 TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGT 215893 ||||||||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||| Sbjct 94598 TTCCACATGCTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTGTTCTCTGCTATGCACGGT 94539 Query 215894 TCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGT 215953 ||||| ||||| || ||||||||| | || || |||||| | ||||| ||| ||| Sbjct 94538 TCACTAGTTACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCAGCTAACGCTGGT 94479 Query 215954 TACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGT 216013 ||||||||||| || || || ||||| |||||||| |||||||| ||||||||||||||| Sbjct 94478 TACAAGTTCGGTCAGGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTACTTTGGT 94419 Query 216014 CGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCA 216073 || || |||||||||||||| |||||||||||||| | ||||||||||||||| || Sbjct 94418 CGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCTCTTCACTTCTTCCTAGCT 94359 Query 216074 GCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAAC 216133 || | || ||||| |||| ||| ||||| | ||| | || |||||||| |||||| Sbjct 94358 GCTTGGCCAGTTATCGGTATTTGGTTTACTGCTCTTGGTATTTCTACTATGGCATTCAAC 94299 Query 216134 CTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACT 216193 || ||||| |||||||||||||| || || || || || || ||||| ||| Sbjct 94298 CTAAACGGATTCAACTTCAACCAATCAGTAGTTGATTCACAAGGACGTGTTATCAACACT 94239 Query 216194 TGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCT 216253 |||| || || | ||| | || |||||||||||||| |||||||||||||||||| Sbjct 94238 TGGGGTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCACGAGCGTAACGCT 94179 Query 216254 CACAACTTCCCATTAGAC 216271 |||||||||||| | ||| Sbjct 94178 CACAACTTCCCACTTGAC 94161 >seq60 Length=599436 Score = 679 bits (752), Expect = 0.0 Identities = 775/1040 (75%), Gaps = 3/1040 (0%) Strand=Plus/Minus Query 215303 TGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCT 215362 ||| ||||| |||||| |||||| | ||| |||||||||||||| | ||||| ||| Sbjct 100587 TGGATTACTAGTACTGAAAATCGTTTATACATTGGTTGGTTTGGTTGTTTAATGATCCCT 100528 Query 215363 TGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGAT 215422 | | |||| | |||||| |||| | || || ||||| || || ||||| ||| Sbjct 100527 ACGTTATTAACAGCAGCTTCTTGTTACATCATCGCTTTTATCGCAGCTCCGCCTGTAGAT 100468 Query 215423 ATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 215482 || || || ||| | ||||| || ||||| |||||| | || ||||||||||||||| | Sbjct 100467 ATTGATGGTATCCGTGAGCCTGTAGCTGGATCTTTATTATACGGTAACAACATCATCAGT 100408 Query 215483 GGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCA 215542 ||||||||| |||||||||||||||||||||| | ||||||||||| || |||||||| Sbjct 100407 GGTGCTGTTATACCTAGTTCAAACGCAATCGGTATTCACTTCTACCCAATTTGGGAAGCT 100348 Query 215543 GCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTC 215602 || || |||| || ||| | ||||| ||||| |||| |||| | | | ||||| ||| Sbjct 100347 GCTTCAATTGAAGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTATTCCATTTC 100288 Query 215603 CTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATG 215662 | |||||| || || | || | | ||||||||| ||| | ||||||||| Sbjct 100287 TTAATTGGTGTTGCTTGTTGGATGGGTCGTGAATGGGAACTTAGCTACCGTTTAGGTATG 100228 Query 215663 AGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTT 215722 | |||||||| | || || | ||| || || ||| | || || | |||||||||| | Sbjct 100227 CGTCCTTGGATTTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCATCTGCAGTATTCTTA 100168 Query 215723 GTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACA 215782 || || || ||||||| ||| ||||||||||| ||||||| | || || ||||| || Sbjct 100167 GTTTACCCTATCGGTCAAGGTAGTTTCTCTGATGGTATGCCATTAGGTATTTCTGGTACG 100108 Query 215783 TTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATG 215842 || |||| |||| | |||||||| ||||| || |||||| | |||||||||||||| ||| Sbjct 100107 TTTAACTTCATGATCGTTTTCCAAGCTGAACATAACATTTTAATGCACCCATTCCATATG 100048 Query 215843 TTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTT 215902 ||||| |||||||| |||||||||||||| ||| ||| |||||||| || | || Sbjct 100047 GCTGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCAGTGCTATGCACGGATCTTTAGTA 99988 Query 215903 ACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTC 215962 || || | |||| | || |||| || |||||| |||||||||||||| ||| Sbjct 99987 ACTTCAAGTTTAATTCGTGAAACAAGCGAAGTTGAATCTGTTAACTACGGTTACAAATTC 99928 Query 215963 GGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATC 216022 |||||||| || ||||| ||||||||||||||||| || |||||||||||||| | || Sbjct 99927 GGACAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGTCGTTTAATT 99868 Query 216023 TTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCT 216082 |||||||| || |||||||||||| ||| | | || |||||||||||||||| ||| Sbjct 99867 TTCCAATATGCTAGTTTCAACAACTCTAGAGCTTTACATTTCTTCCTTGCAGCATGGCCT 99808 Query 216083 GTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGT 216142 || || | || ||| ||| || | ||||| |||||||| |||||| | |||||| Sbjct 99807 GTAGTTGGGATTTGGTTAACAGCTTTAGGTGTAAGTACTATGGCATTCAACTTAAACGGT 99748 Query 216143 TTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGAC 216202 || ||||||||||| ||||| || || ||| ||||| || ||||| ||| Sbjct 99747 TTTAACTTCAACCAATCTGTTGTTGATAGTGAAGGTCGTGTTATAAACACATGGGCTGAC 99688 Query 216203 GTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 216262 | ||||| | |||| | |||||||||||||||||||| ||||||||||| |||||| Sbjct 99687 ATCATTAACCGTGCAGATTTAGGTATGGAAGTAATGCACGAACGTAACGCTCATAACTTC 99628 Query 216263 CCATTAGACTTGGCTGCTGCTGAATCAACACCAGTTGCTTTAACTGCACCTACTATT--- 216319 |||||||| || || || || ||| ||||| | |||||||| ||||| Sbjct 99627 CCATTAGATTTAGCATCTAACGAGATTTTACCTGTTGCGATTTCTGCACCTTCTATTGTA 99568 Query 216320 GGATAATCAAAACTAAATAT 216339 || |||| || | |||| || Sbjct 99567 GGTTAATTAACAGTAAACAT 99548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745074782503360