Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq318 747 0.0 seq60 643 1e-179 >seq318 Length=132058 Score = 747 bits (828), Expect = 0.0 Identities = 754/976 (77%), Gaps = 6/976 (1%) Strand=Plus/Minus Query 169695 TGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGAT 169754 ||| ||| | |||||||| | ||||| | || | |||||||||||||| | ||||| Sbjct 95133 TGAATGGATTACAAGCACTGAGAACCGTCTATACATCGGTTGGTTCGGTGTTCTTATGAT 95074 Query 169755 CCCATGTCTATTAGCAGCAGCAACCTGCTTT-ATCGTTGCTTTCATCGCAGCTCCACCTG 169813 ||| ||||||| | ||| | | || ||| || | ||||| ||||| ||||| || | Sbjct 95073 CCCTACTCTATTAACTGCAACTTC-TGTTTTCATTATCGCTTTTATCGCTGCTCCTCCAG 95015 Query 169814 TGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCA 169873 ||||||||||||| ||| | || |||||| | ||||| | | || || |||||||||| Sbjct 95014 TGGACATCGATGGTATCCGTGAGCCTGTATCTGGTTCTCTTCTTTACGGAAACAACATCA 94955 Query 169874 TCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGG 169933 |||||||||| ||||| ||| |||| ||||| |||||||| |||||||| || ||||||| Sbjct 94954 TCTCTGGTGCTGTTGTACCAACTTCTAACGCGATCGGTCTACACTTCTACCCAATTTGGG 94895 Query 169934 AAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCC 169993 |||| || |||| ||||| ||| | || |||||||||||||| ||| || | | | || Sbjct 94894 AAGCTGCTTCTCTTGATGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTTTGCC 94835 Query 169994 ACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAG 170053 ||||| | | ||||||| | ||||||||| | | |||||||| || | |||||||| Sbjct 94834 ACTTCTTCCTTGGAATCTGCTCATACATGGGTCGTGAATGGGAACTTTCTTTCCGTTTAG 94775 Query 170054 GTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTAT 170113 ||||||||||||||||| |||||| || ||||| ||||| |||| || ||||||| Sbjct 94774 GTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTAT 94715 Query 170114 TCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAG 170173 || | | || || ||||||| || ||||||||||| || |||||||| |||||||| | Sbjct 94714 TCATCATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTTGGTATCTCTG 94655 Query 170174 GTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCC 170233 ||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||||| Sbjct 94654 GTACATTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCC 94595 Query 170234 ATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCAC 170293 | ||| ||| ||||||||| | ||||| || || | ||||| || ||||||||||||| Sbjct 94594 ACATGCTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTGTTCTCTGCTATGCACGGTTCAC 94535 Query 170294 TTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACA 170353 | || || || ||||||||| | || || || || ||||| ||| ||| ||| |||| Sbjct 94534 TAGTTACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCAGCTAACGCTGGTTACA 94475 Query 170354 AATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGAC 170413 | ||||| || ||||||||||| ||||||||||| || || || || ||||||||| | | Sbjct 94474 AGTTCGGTCAGGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTACTTTGGTCGTC 94415 Query 170414 TTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACAT 170473 | ||||||||||| ||| || ||||| |||| ||||||||||||||| ||| | | Sbjct 94414 TAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCTCTTCACTTCTTCCTAGCTGCTT 94355 Query 170474 TCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTA 170533 || || | | || ||||| ||| | | ||||||| || |||||||| ||||| | Sbjct 94354 GGCCAGTTATCGGTATTTGGTTTACTGCTCTTGGTATTTCTACTATGGCATTCAACCTAA 94295 Query 170534 ATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACA--TG 170591 | ||||| ||||||||||| ||| | || ||| | || | || | | ||| || Sbjct 94294 ACGGATTCAACTTCAACCAATCAGTAGTTGATTCACAAGG--ACGTGTTATCAACACTTG 94237 Query 170592 GGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACA 170651 || || || | ||| | || ||||| ||||||||||| ||||| |||||||| || || Sbjct 94236 GGGTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCACGAGCGTAACGCTCA 94177 Query 170652 CAACTTCCCACTTGAC 170667 |||||||||||||||| Sbjct 94176 CAACTTCCCACTTGAC 94161 >seq60 Length=599436 Score = 643 bits (712), Expect = 1e-179 Identities = 713/948 (75%), Gaps = 2/948 (0%) Strand=Plus/Minus Query 169730 TTGGTTGGTTCGGTGTCTTGATGATCCC-ATGTCTATTAGCAGCAGCAACCTGCTTTATC 169788 |||||||||| ||| || |||||||| | || ||||| ||||||| | || | ||| Sbjct 100556 TTGGTTGGTTTGGTTGTTTAATGATCCCTACGT-TATTAACAGCAGCTTCTTGTTACATC 100498 Query 169789 GTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGT 169848 | ||||| ||||||||||| ||||| || || ||||| ||| | || |||||||| || Sbjct 100497 ATCGCTTTTATCGCAGCTCCGCCTGTAGATATTGATGGTATCCGTGAGCCTGTAGCTGGA 100438 Query 169849 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 169908 || || | || ||||||||||||||| |||||| ||| | || ||||||||||||| Sbjct 100437 TCTTTATTATACGGTAACAACATCATCAGTGGTGCTGTTATACCTAGTTCAAACGCAATC 100378 Query 169909 GGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGT 169968 ||| | |||||||| || ||||||||||| || | | || |||||||| || |||||| Sbjct 100377 GGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCAATTGAAGAGTGGTTATACAACGGT 100318 Query 169969 GGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGA 170028 |||||||| |||||| | | ||||| ||| | || || | || | |||||| | Sbjct 100317 GGTCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGTTGCTTGTTGGATGGGTCGT 100258 Query 170029 CAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCT 170088 | |||||||| |||||||||||||||||||||||||| | ||||||| |||||| Sbjct 100257 GAATGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATTTTCGTAGCATTCTCTGCT 100198 Query 170089 CCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCA 170148 ||||| ||||||||| || ||||||||||| || ||| ||||||| || |||||| Sbjct 100197 CCAGTAGCAGCAGCATCTGCAGTATTCTTAGTTTACCCTATCGGTCAAGGTAGTTTCTCT 100138 Query 170149 GACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAG 170208 || || ||||| ||||||| || ||||| |||||||||||| |||| |||||||| || Sbjct 100137 GATGGTATGCCATTAGGTATTTCTGGTACGTTTAACTTCATGATCGTTTTCCAAGCTGAA 100078 Query 170209 CACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCA 170268 || |||||| | |||||||||||||||||||| || ||||||||| | ||||| || || Sbjct 100077 CATAACATTTTAATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTTTTCGGTGGTTCA 100018 Query 170269 CTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGAT 170328 | ||| || |||||||| || | ||||| || | |||| | || |||| || Sbjct 100017 TTATTCAGTGCTATGCACGGATCTTTAGTAACTTCAAGTTTAATTCGTGAAACAAGCGAA 99958 Query 170329 AACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTT 170388 || || ||||| || |||||||||||||||||||||||||| |||||||| || Sbjct 99957 GTTGAATCTGTTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTA 99898 Query 170389 GCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGT 170448 || || ||||| ||||||||| | | || |||||||||||||| || ||||| | | Sbjct 99897 GCTGCTCATGGTTACTTTGGTCGTTTAATTTTCCAATATGCTAGTTTCAACAACTCTAGA 99838 Query 170449 AGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGT 170508 | | || ||||||||||| ||| |||||||| | || |||||||| | | ||| Sbjct 99837 GCTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTGGGATTTGGTTAACAGCTTTAGGT 99778 Query 170509 ATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGA 170568 | | || |||||||| ||| | || || |||||||||||||| || | || ||| | Sbjct 99777 GTAAGTACTATGGCATTCAACTTAAACGGTTTTAACTTCAACCAATCTGTTGTTGATAGT 99718 Query 170569 TCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAA 170628 ||| || | |||||||| ||| | ||||| | ||| | ||||||||||| Sbjct 99717 GAAGGTCGTGTTATAAACACATGGGCTGACATCATTAACCGTGCAGATTTAGGTATGGAA 99658 Query 170629 GTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGCAACT 170676 |||||||| || ||||| || || ||||||||| | || || ||| || Sbjct 99657 GTAATGCACGAACGTAACGCTCATAACTTCCCATTAGATTTAGCATCT 99610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582842666940800