Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq318 807 0.0 seq60 583 1e-161 >seq318 Length=132058 Score = 807 bits (894), Expect = 0.0 Identities = 778/994 (78%), Gaps = 6/994 (1%) Strand=Plus/Plus Query 83966 AACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACC 84025 |||||||||||| || | |||||||| || |||||||| |||||||| ||||||||||| Sbjct 94149 AACTGACGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATACC 94208 Query 84026 AAGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGAC 84085 ||| ||||| || | | ||| |||| || |||| |||||| ||| ||| || Sbjct 94209 AAGGTTAGCACGGTTGATAATATCACCCCAAGTGTTGATAACACGTCCTTGTGAATCAAC 94268 Query 84086 AAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGC 84145 | || |||||||| ||||| || || || |||||||| || || ||| ||||| Sbjct 94269 TACTGATTGGTTGAAGTTGAATCCGTTTAGGTTGAATGCCATAGTAGAAATACCAAGAGC 94328 Query 84146 AGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATT 84205 || ||||||||| || | |||||||||||||| | ||| ||||| ||||||||| || Sbjct 94329 AGTAAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGAAGAGAACGAGAGTT 94388 Query 84206 GTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATT 84265 |||||| ||||| || |||||||| |||||||| ||||| ||||||||||| ||||| || Sbjct 94389 GTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGAGCAGCTACAATGTT 94448 Query 84266 ATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGT 84325 |||||||| ||||| |||||||||||||||||| ||| ||| | || || ||||| Sbjct 94449 GTAAGTTTCTTCTTCCTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTCTCAGTAGT 94508 Query 84326 TTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACC 84385 ||| ||||||||||| ||||| || |||||||| ||||| |||||||| | | ||||| Sbjct 94509 TTCACGGATTAGAGATGAAGTAACTAGTGAACCGTGCATAGCAGAGAACAATGAACCACC 94568 Query 84386 GAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTG 84445 ||| ||||||||||| || | |||||| || || |||||||||||||| || || || || Sbjct 94569 GAAAACACCAGCAACACCTAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTG 94628 Query 84446 GAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGA 84505 ||| || | |||| ||||||| || || ||||||||||| ||||| ||||| |||||||| Sbjct 94629 GAATACGATCATGAAGTTGAATGTACCAGAGATACCAAGAGGCATACCATCTGAGAAAGA 94688 Query 84506 ACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTA 84565 |||||| |||| || || | | ||||||||||| || ||||||||||| |||||||| Sbjct 94689 ACCTTGACCGATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTA 94748 Query 84566 AGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCAT 84625 ||| ||| |||||| ||||||||||| | ||| | ||||||||||||||||||||||| Sbjct 94749 AGCTACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCATTCACGACCCAT 94808 Query 84626 GTA--AGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTA 84683 ||| |||| || |||| | |||||| | || | ||||| ||||| ||||| || Sbjct 94809 GTATGAGCAGAT--TCCAAGGAAGAAGTGGCAAACGATTAGTTGGTAAGGACCACCGTTG 94866 Query 84684 TATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCA 84743 || |||||||| || | | || ||||||||||| || ||||| |||||||| || || Sbjct 94867 TAAAGCCATTCATCAAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGTAGACCGATCGCG 94926 Query 84744 TTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCG 84803 ||||| | ||| || || |||||||| ||||||||||||||||| | |||||||||| Sbjct 94927 TTAGAAGTTGGTACAACAGCACCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGAT 94986 Query 84804 ACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATG-AA 84862 || |||||||||||||| || || || ||||| || ||| | | || || || ||| || Sbjct 94987 ACAGGCTCACGGATACCATCGATGTCCACTGGAGGAGCAGCGATAAAAGCGATAATGAAA 95046 Query 84863 ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGAT 84922 ||||| ||| |||| | |||||| || ||||||||| || |||||||| | || | Sbjct 95047 ACAGA-AGTTGCAGTTAATAGAGTAGGGATCATAAGAACACCGAACCAACCGATGTATAG 95105 Query 84923 ACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 |||||| | |||| || | ||| ||||||||| Sbjct 95106 ACGGTTCTCAGTGCTTGTAATCCATTCACAGAAG 95139 >seq60 Length=599436 Score = 583 bits (646), Expect = 1e-161 Identities = 711/968 (73%), Gaps = 6/968 (1%) Strand=Plus/Plus Query 83970 GACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGC 84029 || || | ||| || ||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 99611 GATGCTAAATCTAATGGGAAGTTATGAGCGTTACGTTCGTGCATTACTTCCATACCTAAA 99670 Query 84030 CCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGA 84089 | ||||| |||| | || ||||| || || | |||||| || ||||| |||| | Sbjct 99671 TCTGCACGGTTAATGATGTCAGCCCATGTGTTTATAACACGACCTTCACTATCAACAACA 99730 Query 84090 CTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCA 84149 || ||||||||||| || || | || |||||||| || || ||||| | ||| | Sbjct 99731 GATTGGTTGAAGTTAAAACCGTTTAAGTTGAATGCCATAGTACTTACACCTAAAGCTGTT 99790 Query 84150 AACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTG 84209 |||||||| ||||| || ||||| || || | ||| || || | || | | |||||| Sbjct 99791 AACCAAATCCCAACTACAGGCCATGCTGCAAGGAAGAAATGTAAAGCTCTAGAGTTGTTG 99850 Query 84210 AAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAA 84269 || |||||| ||||| || | |||||| ||||| || |||||||| || || || ||| Sbjct 99851 AAACTAGCATATTGGAAAATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAA 99910 Query 84270 GTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCT 84329 ||||| |||||||| ||||| |||||||| ||||| || || ||| | ||||| Sbjct 99911 GTTTCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAACAGATTCAACTTCGCTTGTTTCA 99970 Query 84330 CGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAAT 84389 || |||| | ||||| || | || || ||||| ||| ||||| | |||||||| Sbjct 99971 CGAATTAAACTTGAAGTTACTAAAGATCCGTGCATAGCACTGAATAATGAACCACCGAAA 100030 Query 84390 ACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAG 84449 ||||||||||| || ||| || || || ||||| | ||||||||||| || ||||| Sbjct 100031 ACACCAGCAACACCAGCCATATGGAATGGGTGCATTAAAATGTTATGTTCAGCTTGGAAA 100090 Query 84450 ACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCT 84509 || | |||| |||| ||||| || || ||||| | |||||| |||||||||||| |||| Sbjct 100091 ACGATCATGAAGTTAAACGTACCAGAAATACCTAATGGCATACCATCAGAGAAACTACCT 100150 Query 84510 TGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCA 84569 || |||| ||| || || | |||||| |||||||| ||||| |||||||||||| | || Sbjct 100151 TGACCGATAGGGTAAACTAAGAATACTGCAGATGCTGCTGCTACTGGAGCAGAGAATGCT 100210 Query 84570 ACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCAT---G 84626 || | ||||| ||||||||||| | ||| || ||||||||||||||||||||| Sbjct 100211 ACGAAAATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCATTCACGACCCATCCAA 100270 Query 84627 TAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATAT 84686 |||||| ||||||| | ||| || || || | | ||| ||||| ||||| || ||| Sbjct 100271 CAAGCAA---CACCAATTAAGAAATGGAATACGATTAATTGGTAAGGACCACCGTTGTAT 100327 Query 84687 AGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTA 84746 | ||| || || || || ||||||||||| || ||||| || | ||| || || || Sbjct 100328 AACCACTCTTCAATTGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCGATTGCGTTT 100387 Query 84747 GAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACT 84806 || || | || |||||| ||||||||||| ||||| | | ||| ||||| || Sbjct 100388 GAACTAGGTATAACAGCACCACTGATGATGTTGTTACCGTATAATAAAGATCCAGCTACA 100447 Query 84807 GGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAG 84866 |||||||||||||| |||||||| || || || || | | || || |||||| |||| Sbjct 100448 GGCTCACGGATACCATCAATATCTACAGGCGGAGCTGCGATAAAAGCGATGATGTAACAA 100507 Query 84867 ACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGG 84926 || || | | || || || ||||| | | ||||||||||||| || | ||| Sbjct 100508 GAAGCTGCTGTTAATAACGTAGGGATCATTAAACAACCAAACCAACCAATGTATAAACGA 100567 Query 84927 TTGTTAGT 84934 || | ||| Sbjct 100568 TTTTCAGT 100575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571268372846560