Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 147 2e-30 >seq1 Length=7344524 Score = 147 bits (162), Expect = 2e-30 Identities = 583/909 (64%), Gaps = 30/909 (3%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||| || | || || || ||| | || | ||||| ||||| || ||||| || || Sbjct 2684372 CATTACACCACTCTTCTGGTAGTCGCCCACGCGCTTTTCGAAGAAGTTGGTTTTACCTTC 2684313 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 || || || ||||| | ||||| || | ||| || | || || | | | | Sbjct 2684312 CAAAGAGATCAGGTCCATCCATGGGAATGGGTTCTCTACGTTGAAGATCTTATCG--TGC 2684255 Query 18777 T--AATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 | | ||| || || | || |||||||| | || || | ||||| || | Sbjct 2684254 TTCAGCGCTACCAGCAGGCGGTCGGCTACAAACTCGATGTACTGGCACATCAGGTCGGCA 2684195 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || || | | || || || ||||| || | |||||| | ||| || | ||| Sbjct 2684194 TTCATACCAATCAGTCCTACGGGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTACG 2684135 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGT-----T 18949 || | | |||||| | || |||||| || | || | | || ||||| | Sbjct 2684134 GCATTGGCAATAATACCTCTCACCGTATCTT--TTGGTAGCTTGTGGATGATGTGATCAT 2684077 Query 18950 TAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAG 19009 | ||| |||||| ||||| ||||| || | ||||| || | || ||||| ||||||| Sbjct 2684076 TGTACAGCAAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAG 2684017 Query 19010 AAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATC 19069 | || | | ||| ||||||| || | || || |||||||| || ||| || || | Sbjct 2684016 AGAAGCTCAGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAAC 2683957 Query 19070 CAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCAT 19129 |||||||||| ||||| || ||||||||||| || | || | || | || | Sbjct 2683956 CAGAAAAGAAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGC-GAAGGA---- 2683902 Query 19130 CATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCT 19189 | ||| | |||||| || ||||| || || || || ||||| || || |||| Sbjct 2683901 -ACCATTCTCAATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCT 2683843 Query 19190 CTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATA 19249 | || | || || || || || | ||| ||||||| ||| | || || | | Sbjct 2683842 CGATGGCGTTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCA 2683783 Query 19250 AACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTG 19309 ||| | || || || ||||| || || |||||||| ||||| || || | | Sbjct 2683782 GGGAGTAAGTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGG 2683723 Query 19310 CTTCTGTTATCTGTACTTC-ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCA 19368 | || || |||||| || ||||||| | | || ||| || || || || || || Sbjct 2683722 CCTCCGTATACTGTACCTCGGCTACAAAGT-TCTCCGCCAGGTTCTCGTTTACGATCCCG 2683664 Query 19369 TCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT 19428 ||| || |||||||| || | ||||||||| || || || ||||| | ||| | Sbjct 2683663 TCAGAGGCCGCAAAAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATCGTCGTTTAGT 2683604 Query 19429 ---GTATTCCAATCATTAATATCT----TTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481 |||||||||| | | ||| | || | |||| || || | ||||| || Sbjct 2683603 TTGCTATTCCAATCGGTCAGGTCTTGGCTCAGGTCAATC----TCCTCCGCAGTCCAGAA 2683548 Query 19482 AGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAAC 19541 | | || || | || ||||| | ||| || ||| || || || || || | ||| Sbjct 2683547 ACAGGCTTCCGACTTCTTATATTCGGCCCAGATGTCATCATGCTGGATGGGGAAGAGAAC 2683488 Query 19542 AAATCTATT 19550 ||||| ||| Sbjct 2683487 AAATCGATT 2683479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103656704480