Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq318 542 8e-150 seq60 509 5e-140 >seq318 Length=132058 Score = 542 bits (600), Expect = 8e-150 Identities = 719/991 (73%), Gaps = 8/991 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||||| ||| ||||||| |||||||||||||| || | || |||||||| || ||| Sbjct 95138 TTCTGTGAATGGATTACAAGCACTGAGAACCGTCTATACATCGGTTGGTTCGGTGTTCTT 95079 Query 25862 ATGATACCCTGCT-TACTCGCAGCCACTACATGTTTT-ATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| || || | | || ||| | |||||| || | || || ||||| || | Sbjct 95078 ATGAT-CCCTACTCTATTAACTGCAACTTC-TGTTTTCATTATCGCTTTTATCGCTGCTC 95021 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || || || || ||||| || |||||||| || || || || | | |||||||||| Sbjct 95020 CTCCAGTGGACATCGATGGTATCCGTGAGCCTGTATCTGGTTCTCTTCTTTACGGAAACA 94961 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 | || || || || || || || || | |||||||| ||||| ||||| || ||||| | Sbjct 94960 ACATCATCTCTGGTGCTGTTGTACCAACTTCTAACGCGATCGGTCTACACTTCTACCCAA 94901 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 | |||||||||| | || || || ||||| ||||| || || || || ||||| || Sbjct 94900 TTTGGGAAGCTGCTTCTCTTGATGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCG 94841 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGA--GACAGTGGGAACTATCTTA 26157 | | ||||||||| | ||| | | || || || || | | |||||||| |||| Sbjct 94840 TTTGCCACTTCTTCCTTGGAAT--CTGCTCATACATGGGTCGTGAATGGGAACTTTCTTT 94783 Query 26158 CAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCT 26217 | | |||| ||| | || ||||| ||| || || | |||||| | | || ||| Sbjct 94782 CCGTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTAC 94723 Query 26218 CGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGG 26277 || || ||| | | || || |||| ||||| ||| ||||| ||||||||||| Sbjct 94722 TGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTTGG 94663 Query 26278 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCA 26337 |||||||||||| || ||||| ||| ||||||||||||| || || || || || ||||| Sbjct 94662 TATCTCTGGTACATTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCA 94603 Query 26338 CCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCA 26397 ||||||||| ||| ||||||||||| ||||||||||| | | ||| |||||||||| Sbjct 94602 CCCATTCCACATGCTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTGTTCTCTGCTATGCA 94543 Query 26398 CGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTA 26457 ||| | |||||||| || || || ||||| || ||| | | ||| || Sbjct 94542 CGGTTCACTAGTTACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCAGCTAACGC 94483 Query 26458 TGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 26517 ||| || ||||| || || || ||||| || || || ||||| ||||| ||||| ||||| Sbjct 94482 TGGTTACAAGTTCGGTCAGGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTACTT 94423 Query 26518 TGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCT 26577 ||| | |||| || || || || ||| || ||| ||||||||||| ||||| || Sbjct 94422 TGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCTCTTCACTTCTTCCT 94363 Query 26578 TGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATT 26637 ||| ||||||| ||| | || || ||| | || || | ||||| | || |||||||| Sbjct 94362 AGCTGCTTGGCCAGTTATCGGTATTTGGTTTACTGCTCTTGGTATTTCTACTATGGCATT 94303 Query 26638 TAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACC 26697 |||||||| || || ||||| ||||| |||||||| ||| | ||| | || Sbjct 94302 CAACCTAAACGGATTCAACTTCAACCAATCAGTAGTTGATTCACAAGGACGTGTTATCAA 94243 Query 26698 TACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAA 26757 || |||| |||| | | ||||| |||||||| || | |||||||||||||||||||| Sbjct 94242 CACTTGGGGTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCACGAGCGTAA 94183 Query 26758 TGCTCATAACTTTCCACTTGACTTAGCATCA 26788 ||||| ||||| ||||||||| | || ||| Sbjct 94182 CGCTCACAACTTCCCACTTGACCTTGCGTCA 94152 >seq60 Length=599436 Score = 509 bits (564), Expect = 5e-140 Identities = 708/982 (72%), Gaps = 10/982 (1%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTA-TGATACC 25869 ||| |||| |||||||| || ||| | || | || ||||| || || ||| |||| || Sbjct 100587 TGGATTACTAGTACTGAAAATCGTTTATACATTGGTTGGTTTGGT-TGTTTAATGAT-CC 100530 Query 25870 CTGC-TTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAG 25928 || | ||| | |||| || | |||| || | || || |||||||| |||||||||| Sbjct 100529 CTACGTTATTAACAGCAGCTTCTTGTTACATCATCGCTTTTATCGCAGCTCCGCCTGTAG 100470 Query 25929 ATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATAT 25988 |||| ||||| || |||||||| || | || || ||| | ||||| ||||| || || Sbjct 100469 ATATTGATGGTATCCGTGAGCCTGTAGCTGGATCTTTATTATACGGTAACAACATCATCA 100410 Query 25989 CAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAG 26048 || || || | || || ||||||||||| | || || ||||| || ||||||| Sbjct 100409 GTGGTGCTGTTATACCTAGTTCAAACGCAATCGGTATTCACTTCTACCCAATTTGGGAAG 100350 Query 26049 CTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACT 26108 ||| || | || |||||| ||||||| || || || || ||| | || | ||||| | Sbjct 100349 CTGCTTCAATTGAAGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTATTCCATT 100290 Query 26109 TCTTAATAGGAGTAGCAGCAT--ATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGG 26166 ||||||| || || || | ||| || | | |||||||| ||| | |||| Sbjct 100289 TCTTAATTGGTGTTGCTTGTTGGATG--GGTCGTGAATGGGAACTTAGCTACCGTTTAGG 100232 Query 26167 AATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGC-TCTCGCAGTGT 26225 ||| | || ||||| || || |||| | || ||| || | ||||| ||| ||||| | Sbjct 100231 TATGCGTCCTTGGATTTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCATCT-GCAGTAT 100173 Query 26226 TCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTG 26285 |||||||||| ||| |||| ||||| ||||| |||||| ||||| | ||||| |||| Sbjct 100172 TCTTAGTTTACCCTATCGGTCAAGGTAGTTTCTCTGATGGTATGCCATTAGGTATTTCTG 100113 Query 26286 GTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCC 26345 |||| |||||||| ||| |||| |||||||| |||||||| || | ||||||||||||| Sbjct 100112 GTACGTTTAACTTCATGATCGTTTTCCAAGCTGAACATAACATTTTAATGCACCCATTCC 100053 Query 26346 ATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTT 26405 ||||||||||||||||||| ||||||||||| | | ||| ||||||||||||| || Sbjct 100052 ATATGGCTGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCAGTGCTATGCACGGATCTT 99993 Query 26406 TGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATA 26465 | || ||||| | ||| ||||| | || | | || || || || || | Sbjct 99992 TAGTAACTTCAAGTTTAATTCGTGAAACAAGCGAAGTTGAATCTGTTAACTACGGTTACA 99933 Query 26466 AGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGAT 26525 | || || ||||| ||||| || || || || || ||||| || || |||||||| | | Sbjct 99932 AATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGTCGTT 99873 Query 26526 TAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTT 26585 ||||||| || ||||| ||||| || ||| | || | |||||||| ||||| | | Sbjct 99872 TAATTTTCCAATATGCTAGTTTCAACAACTCTAGAGCTTTACATTTCTTCCTTGCAGCAT 99813 Query 26586 GGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAA 26645 |||| || ||||| || ||| | ||| || | ||| | | || |||||||| ||| ||| Sbjct 99812 GGCCTGTAGTTGGGATTTGGTTAACAGCTTTAGGTGTAAGTACTATGGCATTCAACTTAA 99753 Query 26646 ATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGG 26705 | ||||||||||| ||||| || || || ||| | | || | ||| ||||||| Sbjct 99752 ACGGTTTTAACTTCAACCAATCTGTTGTTGATAGTGAAGGTCGTGTTATAAACACATGGG 99693 Query 26706 CTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATA 26765 |||| | | ||||| || | | || | ||||| |||||||| ||||| ||||||| Sbjct 99692 CTGACATCATTAACCGTGCAGATTTAGGTATGGAAGTAATGCACGAACGTAACGCTCATA 99633 Query 26766 ACTTTCCACTTGACTTAGCATC 26787 |||| ||| | || |||||||| Sbjct 99632 ACTTCCCATTAGATTTAGCATC 99611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146725124580768