Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq318 664 0.0 seq60 572 5e-159 >seq318 Length=132058 Score = 664 bits (736), Expect = 0.0 Identities = 745/995 (75%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 || |||||||||||||||||||| ||||||||||| |||||||||||||| || | || Sbjct 94156 GCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATACCAAGGTTA 94215 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | ||| ||| ||||||| || || | ||| | |||||||| ||||| Sbjct 94216 GCACGGTTGATAATATCACCCCAAGTGTTGATAACACGTCCTTGTGAATCAACTACTGAT 94275 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || |||||||| || ||||| || || || |||||||| || | || | ||| |||| | Sbjct 94276 TGGTTGAAGTTGAATCCGTTTAGGTTGAATGCCATAGTAGAAATACCAAGAGCAGTAAAC 94335 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | | || ||||||||||| |||||||| || | | || || || || Sbjct 94336 CAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGAAGAGAACGAGAGTTGTTGAAA 94395 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 ||| || |||||||| || | |||||||| || ||||| || |||||||| || || Sbjct 94396 GAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGAGCAGCTACAATGTTGTAAGTT 94455 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 36332 |||||||| || ||||| || || ||| ||| ||||| | |||| |||||||| Sbjct 94456 TCTTCTTCCTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTCTCAGTAGTTTCACGG 94515 Query 36333 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 36392 || || || |||||||| || ||||||||||||| ||| || | |||||||| || Sbjct 94516 ATTAGAGATGAAGTAACTAGTGAACCGTGCATAGCAGAGAACAATGAACCACCGAAAACA 94575 Query 36393 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 36452 || |||||||| ||||| ||||| || ||||||||||| ||||| || || || || || Sbjct 94576 CCAGCAACACCTAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACG 94635 Query 36453 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 36512 | ||| || ||||| || || || |||||||||||||||||||| |||||| ||||| Sbjct 94636 ATCATGAAGTTGAATGTACCAGAGATACCAAGAGGCATACCATCTGAGAAAGAACCTTGA 94695 Query 36513 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 || | ||||||| | |||||||||| || |||||||| || || || ||||||||| Sbjct 94696 CCGATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACA 94755 Query 36573 CATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 36632 ||||| || | |||||||| | || ||||||||||| || |||| ||| | Sbjct 94756 GCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCATTCACGACCCATGTATGAG 94815 Query 36633 GAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCAC 36692 |||| |||| || |||||| | || || ||||| || || || ||||| || | ||| Sbjct 94816 CAGATTCCAAGGAAGAAGTGGCAAACGATTAGTTGGTAAGGACCACCGTTGTAAAGCCAT 94875 Query 36693 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGAT 36752 || || || | ||||||||||| |||||||||||||| |||||||| ||||| || | | Sbjct 94876 TCATCAAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGTAGACCGATCGCGTTAGAAGTT 94935 Query 36753 GGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 36812 || || | || |||||||||||||||||||| || || | | || || ||||||||| Sbjct 94936 GGTACAACAGCACCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGATACAGGCTCA 94995 Query 36813 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGC---AATTAAAAATGCTGTC 36869 || |||||||| || ||||| ||||| ||||| | ||| || ||| |||| | || Sbjct 94996 CGGATACCATCGATGTCCACTGGAGGAGCAGCGATAAAAGCGATAATGAAAACAGAAGT- 95054 Query 36870 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 36929 ||| ||||| || | ||||||||| || || || ||||| || | || || ||||| Sbjct 95055 --TGCAGTTAATAGAGTAGGGATCATAAGAACACCGAACCAACCGATGTATAGACGGTTC 95112 Query 36930 TTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 36964 | || ||||||| ||| ||||| || | | |||| Sbjct 95113 TCAGTGCTTGTAATCCATTCACAGAAGCGTGCCCA 95147 >seq60 Length=599436 Score = 572 bits (634), Expect = 5e-159 Identities = 720/984 (73%), Gaps = 12/984 (1%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 || ||||| || | ||||||||| || |||||||| || ||||| |||||||| ||||| Sbjct 99610 AGATGCTAAATCTAATGGGAAGTTATGAGCGTTACGTTCGTGCATTACTTCCATACCTAA 99669 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||||| ||||||||||| || | || | || | |||||| || Sbjct 99670 ATCTGCACGGTTAATGATGTCAGCCCATGTGTTTATAACACGACCTTCACTATCAACAAC 99729 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||||||||| ||||| | || || |||||||| || || | ||| || Sbjct 99730 AGATTGGTTGAAGTTAAAACCGTTTAAGTTGAATGCCATAGTACTTACACCTAAAGCTGT 99789 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA---TT 36205 | ||| || | | || ||||| || || ||||||||||||||| || ||| || Sbjct 99790 TAACCAAATCCCAACTACAGGCCATGCTGCAAGGAAGAAATGTAAA--GC-TCTAGAGTT 99846 Query 36206 ATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 36265 || || |||||||| ||||| || | | |||||||| |||||||| || || ||||| Sbjct 99847 GTTGAAACTAGCATATTGGAAAATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTT 99906 Query 36266 ATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGT 36325 || || ||||||||||| |||||||| || || ||||| |||||||| | |||| Sbjct 99907 GTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAACAGATTCAACTTCGCTTGT 99966 Query 36326 TTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385 ||||||||| | ||||| || | | ||||||||||||| |||||| | ||||| Sbjct 99967 TTCACGAATTAAACTTGAAGTTACTAAAGATCCGTGCATAGCACTGAATAATGAACCACC 100026 Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445 ||| || || |||||||| ||||||||| || ||||| | || || ||||| || || Sbjct 100027 GAAAACACCAGCAACACCAGCCATATGGAATGGGTGCATTAAAATGTTATGTTCAGCTTG 100086 Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505 || || | ||| || || || || || |||||||| | |||||||||||||||||||| Sbjct 100087 GAAAACGATCATGAAGTTAAACGTACCAGAAATACCTAATGGCATACCATCAGAGAAACT 100146 Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565 ||||| || | |||||| ||||||||||| ||| |||||||||| || || || || | Sbjct 100147 ACCTTGACCGATAGGGTAAACTAAGAATACTGCAGATGCTGCTGCTACTGGAGCAGAGAA 100206 Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 36625 ||||| | ||||| || | |||||||| | || ||||||||||||| || |||| Sbjct 100207 TGCTACGAAAATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCATTCACGACCCAT 100266 Query 36626 GTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATA 36685 || | | |||||| | || ||||| || || | ||| || || || ||||| || Sbjct 100267 CCAACAAGCAACACCAATTAAGAAATGGAATACGATTAATTGGTAAGGACCACCGTTGTA 100326 Query 36686 TAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 36745 ||||||||| || | | ||||||||||| |||||||||||||||| |||||||||||| Sbjct 100327 TAACCACTCTTCAATTGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCGATTGCGTT 100386 Query 36746 CGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGAC 36805 || || | | || ||| |||||||||||| || || | ||| | ||| | || Sbjct 100387 TGAACTAGGTATAACAGCACCACTGATGATGTTGTTACCGTATAATAAAGATCCAGCTAC 100446 Query 36806 AGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTA---AAAA 36862 ||||||||| |||||||| ||||| || || || || || | ||| || || | || | Sbjct 100447 AGGCTCACGGATACCATCAATATCTACAGGCGGAGCTGCGATAAAAGCGATGATGTAACA 100506 Query 36863 TGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAG 36922 | | |||||||||| | | ||||||||||| |||||||| || | || | Sbjct 100507 AGAAG---CTGCTGTTAATAACGTAGGGATCATTAAACAACCAAACCAACCAATGTATAA 100563 Query 36923 GCGGTTGTTTGTACTTGTAACCCA 36946 || || | ||||| |||| ||| Sbjct 100564 ACGATTTTCAGTACTAGTAATCCA 100587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150453092175128