Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq318 648 0.0 seq60 529 5e-146 >seq318 Length=132058 Score = 648 bits (718), Expect = 0.0 Identities = 738/986 (75%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 || || |||||||||||||||||||| || || |||||||| ||||||||||||||||| Sbjct 94156 GCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATACCAAGGTTA 94215 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | | ||| |||||||| | | | || || ||||| ||||| Sbjct 94216 GCACGGTTGATAATATCACCCCAAGTGTTGATAACACGTCCTTGTGAATCAACTACTGAT 94275 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || ||||| || || || |||||||| || || || | || |||| | Sbjct 94276 TGGTTGAAGTTGAATCCGTTTAGGTTGAATGCCATAGTAGAAATACCAAGAGCAGTAAAC 94335 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | | || ||||||| ||| |||||||| || | | ||| ||||| || Sbjct 94336 CAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGAAGAGAACGAGAGTTGTTGAAA 94395 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 ||| || |||||||| || | |||||||| || ||||| || |||||||| || ||| Sbjct 94396 GAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGAGCAGCTACAATGTTGTAAGTT 94455 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAGTTGTTTCAC 5552 ||||| || || ||||| || || ||| ||| |||| || | |||| ||||||| Sbjct 94456 TCTTCTTCCTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTT--CTCAGTAGTTTCAC 94513 Query 5553 GAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATA 5612 | || || || |||||||| || || |||||||||| |||||| | |||||||| | Sbjct 94514 GGATTAGAGATGAAGTAACTAGTGAACCGTGCATAGCAGAGAACAATGAACCACCGAAAA 94573 Query 5613 CCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATA 5672 | ||||||||||| ||||||||||| || ||||||||||| ||||| || || ||||||| Sbjct 94574 CACCAGCAACACCTAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATA 94633 Query 5673 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCT 5732 ||| ||| ||||| || ||||||||||||||||||||||||||||| |||| || | Sbjct 94634 CGATCATGAAGTTGAATGTACCAGAGATACCAAGAGGCATACCATCTGAGAAAGAACCTT 94693 Query 5733 GTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCT 5791 | |||| ||||| | | ||||| | |||| || || ||||| ||||| || || ||| Sbjct 94694 GACCGATTGGGTAGATGATGAATACAGCAGTA-GCAGCTGCAACTGGTGCAGAGTAAGCT 94752 Query 5792 ACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAA 5851 || ||||| || ||||| ||||| | | || ||||||||||| || |||| ||| Sbjct 94753 ACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCATTCACGACCCATGTAT 94812 Query 5852 GCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911 | ||| |||| | ||||||| | |||| |||||||| || || || ||||||||| Sbjct 94813 GAGCAGATTCCAAGGAAGAAGTGGCAAACGATTAGTTGGTAAGGACCACCGTTGTAAAGC 94872 Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971 |||||||| ||| || |||||||| || || |||||||||| || || ||||| || Sbjct 94873 CATTCATCAAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGTAGACCGATCGCGTTAGAA 94932 Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031 | |||||||| || || || |||||||||||||| || || ||||| || | || || Sbjct 94933 GTTGGTACAACAGCACCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGATACAGGC 94992 Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091 ||||| || || |||||||| ||||| || ||||| | || || | || || ||| | Sbjct 94993 TCACGGATACCATCGATGTCCACTGGAGGAGCAGCGATAAAAGCGATAATGAAAACAGAA 95052 Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151 ||||| ||||| || | || ||||| | ||||| ||||| || | || || ||||| Sbjct 95053 GTTGCAGTTAATAGAGTAGGGATCATAAGAACACCGAACCAACCGATGTATAGACGGTTC 95112 Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177 | ||||| |||| ||| |||||||| Sbjct 95113 TCAGTGCTTGTAATCCATTCACAGAA 95138 >seq60 Length=599436 Score = 529 bits (586), Expect = 5e-146 Identities = 709/983 (72%), Gaps = 10/983 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 || ||||| ||| | ||||||||| ||||| || ||||||||||||||||||||||| | Sbjct 99610 AGATGCTAAATCTAATGGGAAGTTATGAGCGTTACGTTCGTGCATTACTTCCATACCTAA 99669 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 | |||||||| | || || ||||| ||| | | | ||| | ||||| || Sbjct 99670 ATCTGCACGGTTAATGATGTCAGCCCATGTGTTTATAACACGACCTTCACTATCAACAAC 99729 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||||||||| ||||| | || || |||||||| | || | || || Sbjct 99730 AGATTGGTTGAAGTTAAAACCGTTTAAGTTGAATGCCATAGTACTTACACCTAAAGCTGT 99789 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAA---CTACGGCTATT 5427 | ||| || | ||| || ||||| | || ||||||||||||||| ||| | || Sbjct 99790 TAACCAAATCCCAACTACAGGCCATGCTGCAAGGAAGAAATGTAAAGCTCTAGAG---TT 99846 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 ||| || |||||||| ||||| || | | |||||||| |||||||| || || ||||| Sbjct 99847 GTTGAAACTAGCATATTGGAAAATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTT 99906 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 || |||||||| ||||| |||||||| || || ||||| ||| || | |||| Sbjct 99907 GTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAACAGATTCAACTTCGCTTGT 99966 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||||||||| | ||||| || | | ||| ||||||||| ||| || | ||||| Sbjct 99967 TTCACGAATTAAACTTGAAGTTACTAAAGATCCGTGCATAGCACTGAATAATGAACCACC 100026 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 ||| || ||||||||||| ||| ||||| || ||||| | || || ||||| || || Sbjct 100027 GAAAACACCAGCAACACCAGCCATATGGAATGGGTGCATTAAAATGTTATGTTCAGCTTG 100086 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 ||| |||| ||| |||||||| |||||||| ||||| | |||||||||||| |||||| Sbjct 100087 GAAAACGATCATGAAGTTAAACGTACCAGAAATACCTAATGGCATACCATCAGAGAAACT 100146 Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATA 5787 || || |||| |||||| ||||| ||||||| | ||||| || || || || || | Sbjct 100147 ACCTTGACCGATAGGGTAAACTAAGAATACTGCAGATGCTGCTGCTACTGGAGCAGAGAA 100206 Query 5788 TGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAA 5847 ||||||| ||||||| || ||||| ||||| | ||| ||||||||||||| || |||| Sbjct 100207 TGCTACGAAAATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCATTCACGACCCAT 100266 Query 5848 GTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTA 5907 || || | |||||| | ||| ||||| |||| | |||||| || || || ||||| Sbjct 100267 CCAACAAGCAACACCAATTAAGAAATGGAATACGATTAATTGGTAAGGACCACCGTTGTA 100326 Query 5908 AAGCCATTCATCGAGATTG--GCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCG 5965 | ||| || || |||| || |||||||| || || |||||||| | || |||||| Sbjct 100327 TAACCACTCTTC--AATTGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCGATTGCG 100384 Query 5966 TTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCG 6025 || || || |||| ||| || || ||||||||||| || || | || |||||| || Sbjct 100385 TTTGAACTAGGTATAACAGCACCACTGATGATGTTGTTACCGTATAATAAAGATCCAGCT 100444 Query 6026 ACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAAT 6085 || || ||||| || || || || || || || || || || | || || | || | Sbjct 100445 ACAGGCTCACGGATACCATCAATATCTACAGGCGGAGCTGCGATAAAAGCGATGATGTAA 100504 Query 6086 GCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGG 6145 || || ||| ||||| | | || |||||||| ||||||||| || | || | Sbjct 100505 CAAGAAGCTGCTGTTAATAACGTAGGGATCATTAAACAACCAAACCAACCAATGTATAAA 100564 Query 6146 CGGTTGTTGGTGCTAGTAACCCA 6168 || || | || ||||||| ||| Sbjct 100565 CGATTTTCAGTACTAGTAATCCA 100587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152648273093352