Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq318 654 0.0 seq60 560 3e-155 >seq318 Length=132058 Score = 654 bits (724), Expect = 0.0 Identities = 748/1004 (75%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| | || || | |||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct 94147 TCAACTGACGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATA 94206 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | || |||||||| | ||| ||| ||||||| || || | ||| | |||||| Sbjct 94207 CCAAGGTTAGCACGGTTGATAATATCACCCCAAGTGTTGATAACACGTCCTTGTGAATCA 94266 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || ||||| || |||||||| || ||||| || || || |||||||| || | || | | Sbjct 94267 ACTACTGATTGGTTGAAGTTGAATCCGTTTAGGTTGAATGCCATAGTAGAAATACCAAGA 94326 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 || |||| ||| || | | || ||||||||||| |||||||| || | | ||| Sbjct 94327 GCAGTAAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGAAGAGAACGAGAG 94386 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || ||| || |||||||| || | |||||||| || ||||| || |||||| Sbjct 94387 TTGTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGAGCAGCTACAATG 94446 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 || || || |||||||| || ||||| || || ||| ||| ||||| | |||| Sbjct 94447 TTGTAAGTTTCTTCTTCCTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTCTCAGTA 94506 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 |||||||| || || || |||||||| || ||||||||||||| ||| || | ||| Sbjct 94507 GTTTCACGGATTAGAGATGAAGTAACTAGTGAACCGTGCATAGCAGAGAACAATGAACCA 94566 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923 ||||| || || |||||||| ||||| ||||| || ||||||||||| ||||| || || Sbjct 94567 CCGAAAACACCAGCAACACCTAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCT 94626 Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 || || || | ||| || ||||| || || || |||||||||||||||||||| |||||| Sbjct 94627 TGGAATACGATCATGAAGTTGAATGTACCAGAGATACCAAGAGGCATACCATCTGAGAAA 94686 Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 26043 ||||| || | ||||||| | |||||||||| || |||||||| || || || Sbjct 94687 GAACCTTGACCGATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAG 94746 Query 26044 TAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 26103 ||||||||| ||||| || | ||| |||| | || ||||||||||| || ||| Sbjct 94747 TAAGCTACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCATTCACGACCC 94806 Query 26104 AAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTA 26163 | ||| | |||| || | || |||||| | || || ||||| || || |||||||| Sbjct 94807 ATGTATGAGCAGATTCCAAGGAAGAAGTGGCAAACGATTAGTTGGTAAGGACCACCGTTG 94866 Query 26164 TACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 26223 || | ||| || || || | ||||||||||| |||||||||||||| |||||||| ||| Sbjct 94867 TAAAGCCATTCATCAAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGTAGACCGATCGCG 94926 Query 26224 TTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 26283 ||||| | || || | || || ||||||||||||||||| || || | | || || Sbjct 94927 TTAGAAGTTGGTACAACAGCACCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGAT 94986 Query 26284 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGC---AATTAAA 26340 ||||||||||| |||||||| || ||||| ||||| ||||| | ||| || ||| ||| Sbjct 94987 ACAGGCTCACGGATACCATCGATGTCCACTGGAGGAGCAGCGATAAAAGCGATAATGAAA 95046 Query 26341 AATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAG 26400 | | || ||| ||||| || | ||||||||| || || || ||||| || | || Sbjct 95047 ACAGAAGT---TGCAGTTAATAGAGTAGGGATCATAAGAACACCGAACCAACCGATGTAT 95103 Query 26401 AGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 26444 || ||||| | || ||||||| ||| ||||| || | | |||| Sbjct 95104 AGACGGTTCTCAGTGCTTGTAATCCATTCACAGAAGCGTGCCCA 95147 >seq60 Length=599436 Score = 560 bits (620), Expect = 3e-155 Identities = 716/984 (73%), Gaps = 12/984 (1%) Strand=Plus/Plus Query 25449 AGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 25508 ||||||||| || | |||||||| || |||||||| || ||||| |||||||| ||||| Sbjct 99610 AGATGCTAAATCTAATGGGAAGTTATGAGCGTTACGTTCGTGCATTACTTCCATACCTAA 99669 Query 25509 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 25568 || |||||||||| ||||||||||| || | || | || | |||||| || Sbjct 99670 ATCTGCACGGTTAATGATGTCAGCCCATGTGTTTATAACACGACCTTCACTATCAACAAC 99729 Query 25569 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 25628 || || ||||||||||| ||||| | || || |||||||| || || | ||| || Sbjct 99730 AGATTGGTTGAAGTTAAAACCGTTTAAGTTGAATGCCATAGTACTTACACCTAAAGCTGT 99789 Query 25629 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA---CTACGGCTATT 25685 | ||| || | | || ||||| || || ||||||||||||||| ||| | || Sbjct 99790 TAACCAAATCCCAACTACAGGCCATGCTGCAAGGAAGAAATGTAAAGCTCTAGAG---TT 99846 Query 25686 ATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 25745 || || |||||||| ||||| || | | |||||||| |||||||| || || ||||| Sbjct 99847 GTTGAAACTAGCATATTGGAAAATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTT 99906 Query 25746 ATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGT 25805 || || ||||||||||| |||||||| || || ||||| |||||||| | |||| Sbjct 99907 GTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAACAGATTCAACTTCGCTTGT 99966 Query 25806 TTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 25865 ||||||||| | ||||| || | | ||||||||||||| |||||| | ||||| Sbjct 99967 TTCACGAATTAAACTTGAAGTTACTAAAGATCCGTGCATAGCACTGAATAATGAACCACC 100026 Query 25866 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 25925 ||| || || |||||||| ||||||||| || ||||| | || || ||||| || || Sbjct 100027 GAAAACACCAGCAACACCAGCCATATGGAATGGGTGCATTAAAATGTTATGTTCAGCTTG 100086 Query 25926 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 25985 || || | ||| || || || || || |||||||| | |||||||||||||||||||| Sbjct 100087 GAAAACGATCATGAAGTTAAACGTACCAGAAATACCTAATGGCATACCATCAGAGAAACT 100146 Query 25986 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 26045 ||||| || | |||||| ||||||||||| ||| |||||||||| || || || || | Sbjct 100147 ACCTTGACCGATAGGGTAAACTAAGAATACTGCAGATGCTGCTGCTACTGGAGCAGAGAA 100206 Query 26046 AGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 26105 ||||| | ||||| || | ||| |||| | || ||||||||||||| || |||| Sbjct 100207 TGCTACGAAAATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCATTCACGACCCAT 100266 Query 26106 GTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATA 26165 || | | || || | || ||||| || || | ||| || || |||||||| || Sbjct 100267 CCAACAAGCAACACCAATTAAGAAATGGAATACGATTAATTGGTAAGGACCACCGTTGTA 100326 Query 26166 CAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 26225 |||||||| || | | ||||||||||| |||||||||||||||| |||||||||||| Sbjct 100327 TAACCACTCTTCAATTGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCGATTGCGTT 100386 Query 26226 AGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGAC 26285 || || | | || || |||||||||||| || || | ||| | ||| | || Sbjct 100387 TGAACTAGGTATAACAGCACCACTGATGATGTTGTTACCGTATAATAAAGATCCAGCTAC 100446 Query 26286 AGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTA---AAAA 26342 ||||||||| |||||||| ||||| || || || || || | ||| || || | || | Sbjct 100447 AGGCTCACGGATACCATCAATATCTACAGGCGGAGCTGCGATAAAAGCGATGATGTAACA 100506 Query 26343 TGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAG 26402 | | |||||||||| | | ||||||||||| |||||||| || | || | Sbjct 100507 AGAAG---CTGCTGTTAATAACGTAGGGATCATTAAACAACCAAACCAACCAATGTATAA 100563 Query 26403 GCGGTTGTTTGTACTTGTAACCCA 26426 || || | ||||| |||| ||| Sbjct 100564 ACGATTTTCAGTACTAGTAATCCA 100587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151992278795632