Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 2e-12 seq3 84.2 5e-12 seq2 80.6 7e-11 >seq6 Length=3173221 Score = 86.0 bits (94), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 ||| ||| | |||||| ||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 2219892 TGGCGCGCCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCC 2219833 Query 2873 AACTGAGCTA 2882 | |||||||| Sbjct 2219832 AGCTGAGCTA 2219823 >seq3 Length=4400433 Score = 84.2 bits (92), Expect = 5e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2823 TGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCCAACTGAGCTA 2882 ||||||||||||||||||| || ||| ||||||| ||| |||||||||||||||||||| Sbjct 3743435 TGCAGGATTCGAACCTGCGACCGTCCGATTAGAAGTCGGGTGCTCTATCCAACTGAGCTA 3743494 Query 2883 A 2883 | Sbjct 3743495 A 3743495 >seq2 Length=6328565 Score = 80.6 bits (88), Expect = 7e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2824 GCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCCAACTGAGCTA 2882 |||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||| Sbjct 2784456 GCAGGATTCGAACCTGCGACCATTCGCTTAGAAGGCGAGTGCTCTATCCAGCTGAGCTA 2784398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123666125022864