Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq19 134 4e-27 seq5 111 5e-20 seq2 100 9e-17 seq6 91.5 5e-14 seq403 80.6 8e-11 >seq19 Length=1029424 Score = 134 bits (148), Expect = 4e-27 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | |||||| ||||||||||| || ||||||||||| |||||||| || Sbjct 739403 CCCGGTGGTGGCGCTGTCCCAGCTCAACCGGAGTCTTGAGCAGCGGCCCAACAAGCGCCC 739344 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 | | | || || || || || || || || ||||||||||||||||| || |||||||| Sbjct 739343 GGTTAACTCCGATCTACGGGAATCGGGCGCCATCGAGCAGGACGCCGACGTCATCATGTT 739284 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 |||||||| || |||||||| || || || | | || ||| | || ||| | || Sbjct 739283 TGTGTACCGGGATGAGGTCTATAACGAAGACACGCCGGACAAGGGCATTGCCGAGATCAT 739224 Query 21493 CATCGCGAAGCACCGCAACGGC 21514 ||| | ||||| || |||||| Sbjct 739223 CATTGGCAAGCAGCGGAACGGC 739202 >seq5 Length=3486096 Score = 111 bits (122), Expect = 5e-20 Identities = 177/250 (71%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 21314 CCCG-TGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 |||| |||| | ||| |||||||| ||||| | ||||||||||||| |||||||| || Sbjct 203693 CCCGATGATTGCGCTCTCGCAGCTAAACCGTGGCGTGGAGCAGCGGCCAAACAAGCGTCC 203752 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 |||| ||||| || || || || || ||||| ||||| |||||||| || ||| |||| Sbjct 203753 AATGAATTCGGATCTTCGAGAATCAGGTGCGATTGAGCAAGACGCCGACGTTATCCTGTT 203812 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 | || ||||| ||| |||| || ||| | | | || || | || ||| | || Sbjct 203813 TATTTATCGCGATGAGTACTACAACGAGGAAAGTCCGGACAAAGGTATTGCCGAGATTAT 203872 Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAAGCA-CTGTTCGGTGCGCGTTCCTGGGTAAGT 21551 | | || || || ||||||||| ||| |||| ||| ||||| |||| ||| Sbjct 203873 TCTGGGCAAACAGCGAAACGGCGAGATTGGCACCTGTCGTCTGC-AGTTCCAGGGTGAGT 203931 Query 21552 ACTCGCGATT 21561 || | |||| Sbjct 203932 ACACCAGATT 203941 >seq2 Length=6328565 Score = 100 bits (110), Expect = 9e-17 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 21363 ACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATG 21422 |||| || ||||||||||| |||||||| || ||||| ||||||||||||||||||| | Sbjct 2414241 ACAAACGGCCGATGATGTCAGACCTGCGTGAATCCGGTTCGATCGAGCAGGACGCCGACG 2414182 Query 21423 TGATCATGTTCGTGTACCGCGACGAGGTCTACC 21455 ||||| ||||||||| ||| || || ||||| Sbjct 2414181 TGATCCTGTTCGTGTTCCGTGAAGAATACTACC 2414149 >seq6 Length=3173221 Score = 91.5 bits (100), Expect = 5e-14 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 13616 AATCTGCTGGTAGATCTCGGAGCGGTGGATGGCGACGTCGTCCGGGGCGGTGATGCCGAG 13675 |||| |||||||||| || |||||| | || || || | |||||| ||| ||| | Sbjct 3091294 AATCCGCTGGTAGATTTCTTCGCGGTGTACCGCAACTTCTTTCGGGGCATTGACGCCAAT 3091353 Query 13676 GCGCACCTGGTCGCC-TTGGCTGCTGAGGACCGTGACGGTGATGTTGTCGCCGATATGCA 13734 ||| ||||| | ||| || || | ||||| ||||||||||| | |||||||| || Sbjct 3091354 GCGTACCTGATTGCCCTTCACTCCC-AGGACGGTGACGGTGATATCGTCGCCGACCATCA 3091412 Query 13735 GGGTTTCGCCGGGGCGGCGGGTCAAGATCAGCAT 13768 | |||||||| |||||| ||||| |||| ||| Sbjct 3091413 GAGTTTCGCCAACGCGGCGAGTCAAAATCAACAT 3091446 >seq403 Length=83078 Score = 80.6 bits (88), Expect = 8e-11 Identities = 102/138 (74%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 21311 ATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCC-GAACAAGCG 21369 ||||||||| ||| || |||||||| || |||| ||| || | |||| || Sbjct 51615 ATCCCCGTGGTCGCCCTCTCGCAGCTGTCGCGTCAGGTGGAA-AGCCGCGAGGACAAACG 51557 Query 21370 ACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCAT 21429 ||| | |||||||||| || || || || ||||||| ||||||||||||||| | || Sbjct 51556 CCCGCAGCTGTCGGACCTTCGGGAATCAGGCTCGATCGAACAGGACGCCGATGTGGTGAT 51497 Query 21430 GTTCGTGTACCGCGACGA 21447 ||| |||| |||||| || Sbjct 51496 GTTTGTGTTCCGCGAAGA 51479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157109034317848