Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 >seq1 Length=7344524 Score = 116 bits (128), Expect = 4e-21 Identities = 303/461 (66%), Gaps = 6/461 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||| ||||| || | ||| ||||| | || ||||| |||||||| ||| | Sbjct 2684068 AAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGAAGCTC 2684009 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 | || ||||| ||||| | || || | ||| || || | || || ||||||||| Sbjct 2684008 AGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAGAAAAG 2683949 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || ||||| || ||||||||||| || | || || | |||| |||| || || Sbjct 2683948 AAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAA---GGAACCATTCTC- 2683893 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 |||||| | ||| || || ||| || || || || | || || || || Sbjct 2683892 --AATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGGCG 2683835 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || || || ||| |||||| | | ||| | ||||| || || || || | || Sbjct 2683834 TTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGTAA 2683775 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 | || ||||| ||||| || || |||||||| || || || | | || || | Sbjct 2683774 GTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCGTA 2683715 Query 37533 AATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 | || || ||| | ||| ||| || | ||| || || || ||||| ||| || Sbjct 2683714 TACTGTACCTCGGCTACAAAGTTCTCCGCCAGGTTCTCGTTTACGATCCCGTCAGAGGCC 2683655 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 ||||| || || || |||| |||||| || || | ||||| Sbjct 2683654 GCAAAAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATC 2683614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592311380301280