Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq198 109 4e-19 seq19 91.5 1e-13 >seq198 Length=250510 Score = 109 bits (120), Expect = 4e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 29895 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 29954 |||||| || | |||| |||||| || || || |||||||| ||||||||| | | Sbjct 63963 CGTGAGCAGCGCGTAGGAGGCGATATTGAAAGGCACCCCGAGACCCATGTCCGCGCTGCG 64022 Query 29955 CTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCA 30014 |||||| | ||| || || ||||| || || |||||||||||| || | ||||||| Sbjct 64023 CTGGTACATCTGGCAGGACAGCTCCCCCTCCGCCACGTAAAACTGGCAGAACATGTGGCA 64082 Query 30015 CGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCT 30074 ||| || || ||||| ||| | ||| ||||||||||| | | | ||| | || Sbjct 64083 CGGGGGGAGGGCCATCTTGCCGAGGTCCGACGGGTTCCAGGCAGAGAGTACGATTCTCCG 64142 Query 30075 GTCTTCTGGGTTGTTCCT 30092 ||| || |||||| |||| Sbjct 64143 GTCCTCCGGGTTGGTCCT 64160 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 ||||| || |||||| |||||| |||||| || |||||| ||||| || || || || Sbjct 64664 AGCTGGTCGACCCCCTTCCCCGTGTAGTCGGCGTGCATGTCGGTGTATTCGGCGCCAAAG 64723 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 ||||||||||| || |||||||||||||| ||||| || || ||||| | | || |||| Sbjct 64724 TGCCTCCACTGAAAGCCGTACACCGGTCCGAGGTCGCCTTCCTCCCTCTCCGTGAGGCCC 64783 Score = 82.4 bits (90), Expect = 6e-11 Identities = 165/241 (68%), Gaps = 9/241 (4%) Strand=Plus/Plus Query 30247 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 30306 || ||||| || ||||| |||||||||| | | |||| | || |||| | || | | Sbjct 65172 AACTCTCTCGATCCGTTCCCGTCCCAGATGTGGATCCCCCTGTCCTTGAGCACGTTTGCG 65231 Query 30307 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30366 || ||| | || || |||||||||||||||||| ||||| | ||| || || | | Sbjct 65232 TTGGTGCAGCCGGAAACAAACCACAGCAGCTCCTCCGCGACGCCGCGCCAGAACACGCGC 65291 Query 30367 TTGGTCGTGAGGAG-GGGA--AACTGTCCCTTGAGGCCGTA---CATGGCCTGAGAACCA 30420 ||||| ||||| || |||| | || || | |||| | | ||| ||| || Sbjct 65292 TTGGTGGTGAGCAGCGGGAAGAGCTCCTCCCTCAGGCTGAAGCGCAT---CTGCACGCCG 65348 Query 30421 AACACGGACAAGACTCCCGTGCCCGTCCTGTCTCCCCTGCGTTTACCGTTTTCCAAGACG 30480 ||| ||||| | ||||| || || | ||| |||||||| |||||||||| || | Sbjct 65349 AACTTGGACAGGGTCCCCGTCCCGGTGCGGTCCCCCCTGCGCACGCCGTTTTCCAGGATG 65408 Query 30481 T 30481 | Sbjct 65409 T 65409 >seq19 Length=1029424 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29822 GGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGT 29881 |||| | |||| ||| || | ||| || || |||||||| || || || | Sbjct 785002 GGTACAGGTGACAGTCGCCGAAGGTATGCACGAACTCTCCAACCTCCAGGTCGCACTGTT 785061 Query 29882 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 29941 | || ||||||| |||||| |||| |||| ||| || || || || || || || || Sbjct 785062 GGGCAATCATGTGCGTGAGCAGAGCGTAGGAGGCAATATTGAACGGCACGCCCAGGAACA 785121 Query 29942 TGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGAC 30001 ||| | | |||||||||||| || || ||| ||||||| |||||| ||||| Sbjct 785122 GGTCGGCGCTGCGCTGGTAGAGCTGGCAGGAAAGCCTTCCGTCGGCCACGTAGAACTGGA 785181 Query 30002 ACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCC 30036 ||| | |||||| || | ||||||||| ||||| Sbjct 785182 ACAGGCAGTGGCAAGGCGCCAGAGCCATGCGGCCC 785216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408613954620236