Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq6 197 2e-45 seq201 86.0 1e-11 seq5 86.0 1e-11 >seq6 Length=3173221 Score = 197 bits (218), Expect = 2e-45 Identities = 281/393 (72%), Gaps = 13/393 (3%) Strand=Plus/Plus Query 22978 TCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGG- 23036 || || ||||||||||| || || || ||| |||||| ||||||||| ||||| Sbjct 3121225 TCGTCGGATTCAAAGAAGAGCATCTGGGCGACGCCTTCGTTGGCGTAGATCTTCGCCGGG 3121284 Query 23037 -GCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCG 23095 | ||| ||||| ||||| || ||||| || | | ||||| |||||| || ||||| | Sbjct 3121285 AGGTTG--GTGGTGTTGGAGAATTCCAGGGTTACCTGGCCTTCCCATTCCGGCTCCAGGG 3121342 Query 23096 GCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTA 23155 | |||||||| ||||||||||||||||| ||||| || || ||||| |||||||| | Sbjct 3121343 GAGTGACGTTAACGATGATGCCGCAACGAGCATAGGTGGACTTGCCCAGGCAGATTGTCA 3121402 Query 23156 ATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCG 23215 | || ||||||||| ||||| ||| |||| ||||||||||| |||||||| Sbjct 3121403 AAACACTTCGCGGAATGCGGAAGTATTCAACCGTGCGGGCCAGTGCGAAGGAGTTCGGCG 3121462 Query 23216 GAATGATCAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAAT 23275 ||||||| | | | |||| ||| | | |||||| ||| ||| ||| | Sbjct 3121463 GAATGATGCAGACGTCGCCG--------GTG-TAGTTGACGAAACTGTTCTCGTCGAAGT 3121513 Query 23276 TCTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAAC 23335 |||| || || || || | | ||||||||| | ||||||||||| | ||| | Sbjct 3121514 TCTTCGGGTCCACGGTGGCTGAGTGGACGTTGGTGAAGATTTTGAATTCGTTGCTGCAGC 3121573 Query 23336 GAATATCGTAGCCGTAGCTGGAAACACCGTAGG 23368 | | ||||||||||||||||| ||||||| Sbjct 3121574 GTACGTCGTAGCCGTAGCTGGAGGTGCCGTAGG 3121606 >seq201 Length=246981 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 174011 ACCTGCTCGACGTGGTTGGAATAAATGTGCGCATCGCCGATGGTAATGTGC-ATATTGCG 174069 |||||||| | ||||||||||| ||||| || |||||||||| |||| | | || || Sbjct 13758 ACCTGCTCCATATGGTTGGAATAGATGTGGGCGTCGCCGATGG-AATGCACGAAATCGCC 13816 Query 174070 AGCCTGCAAATCGTGTG-CGTGGGCCAGCATTTCGGTAAGCATTGCGTACTGGGCAACGT 174128 | || | || ||| | ||||||||||| | ||||| ||||| ||| | || Sbjct 13817 GGGCTCGTACCCG-GTGACATGGGCCAGCATGACCAGAAGCAGCGCGTAAGAGGCGATGT 13875 Query 174129 TGAACGGCGCGCCCAAGAACATGTCATTGGAACGCATGTACAGCT 174173 |||| ||| |||||| ||||||||| |||||| |||||||| Sbjct 13876 TGAAGGGCACGCCCAGGAACATGTCGGCCGAACGCTGGTACAGCT 13920 >seq5 Length=3486096 Score = 86.0 bits (94), Expect = 1e-11 Identities = 222/334 (66%), Gaps = 11/334 (3%) Strand=Plus/Minus Query 23044 GTGGTATTGGAAAACTCCAGAGTAAGCGAG-CCTTTCCATTCTGGTTCCAGCGGCGTGAC 23102 || ||||||||||||||||| || | || | |||| ||| || ||||| ||||| ||||| Sbjct 1113664 GTCGTATTGGAAAACTCCAGCGTCA-CGTGCCCTTCCCACTCGGGTTCGAGCGGTGTGAC 1113606 Query 23103 GTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTC 23162 ||| ||||| || || || || || || || ||||| || | || | || || Sbjct 1113605 GTTCACGATAATCCCACAGCGGGCGTAGGTGGATTTACCCAAACAAACCGTCAACACCGA 1113546 Query 23163 ACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT 23222 |||||| || ||||| |||| |||| ||||| || || ||| ||||| || || Sbjct 1113545 ACGCGGGATACGGAAGTATTCCACCGTGCGAGCCAGAGCAAAGGAGTTTGGCGGGATAAT 1113486 Query 23223 CAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGG 23282 || | || |||| || ||| || || | | || ||| |||| || Sbjct 1113485 GCAGCAATCACC-TTTGAAA------TCG--ACAAAGCTACCCTCATCAAAACTCTTCGG 1113435 Query 23283 ATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATC 23342 ||| | ||| || | |||||||| | |||||| |||| ||||||| || Sbjct 1113434 ATCAATTGTCGCCGAGTTAACATTGGTGAATATCTTGAACTCGTCGGAACAACGAACGTC 1113375 Query 23343 GTAGCCGTAGCTGGAAACACCGTAGGGAATGATC 23376 ||||||||||| || || |||| ||| ||| Sbjct 1113374 ATAGCCGTAGCTAGAGGTGCCATAGGAAATAATC 1113341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897585387018560