Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq5 104 7e-18 >seq5 Length=3486096 Score = 104 bits (114), Expect = 7e-18 Identities = 215/318 (68%), Gaps = 9/318 (3%) Strand=Plus/Minus Query 25970 CGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTT---TTCCCACTTGCGGG 26026 ||||| | ||||| || |||||||| || || ||| |||| || ||| ||||| | Sbjct 756556 CGTTGGCAACAATCTCTGTGGTGTAACGATCCTGGCCATCCTGACCTTGCCATTTGCGCG 756497 Query 26027 TTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCT 26086 || ||| ||||| || || |||| |||||| |||||||| ||||| ||||||| Sbjct 756496 TTCTCAACGCACCCTCTATATAGACCTTGCTACCTTTTTTCAGGTATTCGCCGGCGATCT 756437 Query 26087 CCGCTACC---TTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGC 26143 | || | ||| || | ||| || || |||||||| || || | || | || Sbjct 756436 CAGCCAGACGATTG---AAGAACACAACACGGTGCCATTCAGTACGCTCCTGCTGCTGGC 756380 Query 26144 CGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGC 26203 |||||||||| || ||||| |||| ||||| || | | | || | || |||| | Sbjct 756379 CGGTCTGCTTGTCTTTCCATGTTTCGGAGGTAGCAATACTGAGATTAGTAACCGCGCTTC 756320 Query 26204 CATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTAT 26263 | | || | || | ||||| ||| | || ||||| || || || ||||| | Sbjct 756319 CGCTGGGTAAATACTTTGTTTCTGGGTCGCTGCCGCAATTACCCACTAGAATGACTTTGT 756260 Query 26264 TTACGCCGCGTGATGCCA 26281 |||| || |||||||||| Sbjct 756259 TTACACCTCGTGATGCCA 756242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159816210785512