Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_018269.1 Length=31766 Score E Sequences producing significant alignments: (Bits) Value seq19 104 5e-18 seq5 86.0 1e-12 >seq19 Length=1029424 Score = 104 bits (114), Expect = 5e-18 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 25065 ATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAA 25124 || || |||||| | | || || || | ||| | || ||||| ||||| ||||||| Sbjct 739423 ATTGCCAAAGAACTCAGCTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGGAGTCTTGAG 739364 Query 25125 AACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAG 25184 | | | | |||||||| ||||||| || | || || || ||||| || || ||| Sbjct 739363 CAGCGGCCCAACAAGCGCCCGGTTAACTCCGATCTACGGGAATCGGGCGCCATCGAGCAG 739304 Query 25185 GATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGAC 25244 || || || | ||| || | ||||| || || || |||||| |||| | ||| Sbjct 739303 GACGCCGACGTCATCATGTTTGTGTACCGGGATGAGGTCTATAACGAAGACACGCCGGAC 739244 Query 25245 AAAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGGC 25286 || |||||||||||||| ||||||||||| || |||| ||| Sbjct 739243 AAGGGCATTGCCGAGATCATCATTGGCAAGCAGCGGAACGGC 739202 >seq5 Length=3486096 Score = 86.0 bits (94), Expect = 1e-12 Identities = 175/260 (67%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 25038 TCAGAAATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCG 25097 ||||| ||||| || || ||| ||||| |||||| | || || ||||| ||| Sbjct 203646 TCAGAGATTTCCCGCTCGCTGAAACAGGTGGCGCGTGAATTTGACTGCCCGATGATTGCG 203705 Query 25098 TTATCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGAC 25157 | || ||||| ||||| || | || | | | | ||||| ||||| || || || Sbjct 203706 CTCTCGCAGCTAAACCGTGGCGTGGAGCAGCGGCCAAACAAGCGTCCAATGAATTCGGAT 203765 Query 25158 TTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGAC 25217 | || || || || ||||| || || || || || | ||| || || || || || Sbjct 203766 CTTCGAGAATCAGGTGCGATTGAGCAAGACGCCGACGTTATCCTGTTTATTTATCGCGAT 203825 Query 25218 GAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACAC 25277 || || ||| || || | |||||||| |||||||||||||| | |||||||| Sbjct 203826 GAGTACTACAACGAGGAAAGTCCGGACAAAGGTATTGCCGAGATTATTCTGGGCAAACAG 203885 Query 25278 AGGAATGGCGAGCTAGGCAC 25297 | || |||||| | ||||| Sbjct 203886 CGAAACGGCGAGATTGGCAC 203905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101528717453952