Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_018282.1 Length=61167 Score E Sequences producing significant alignments: (Bits) Value seq273 132 2e-26 seq6 107 7e-19 >seq273 Length=166498 Score = 132 bits (146), Expect = 2e-26 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 6585 CTGTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGTGCTGTTCATC 6644 |||||| || ||||||| | ||||| |||| || |||||||| ||| | |||||| Sbjct 146592 CTGTGGAACCGCATCATGCAGGCGACCTATGATTACGCCGAGCCGGGTGTGATCTTCATC 146533 Query 6645 GACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCCC 6704 ||| ||||||| |||||||| | || ||||| ||||| ||||| ||||||||| Sbjct 146532 GACCGCATCAACCAGGCCAACAACCTGAGCTATTGCGAAACCATTGCCGCGACCAACCCC 146473 Query 6705 TGCGGTGAGCAACCCCTCCCGCCCTACGGTGCCTGTCTCCTGGGCTCCTTCAACCTGG 6762 ||||| || || || || |||||||| || ||||| || |||||||| ||||| ||| Sbjct 146472 TGCGGGGAACAGCCGCTGCCGCCCTATGGGGCCTGCCTTCTGGGCTCGGTCAACTTGG 146415 Score = 89.7 bits (98), Expect = 2e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 7133 CGAGGACGTGCGGGACGCCATCGCCAAATACGGCATCCGCAACTCCCACCTCACTTCCAT 7192 |||||||||||| | ||| | ||| || | ||||||||||| | | || || ||| | Sbjct 146044 CGAGGACGTGCGCGCAGCCGTGGCCGAACATGGCATCCGCAATGCGCTGCTGACGTCCGT 145985 Query 7193 CGCCCCGACCGGGACCATCAGCCTGTGCGCCGACAACGTCAGCTCCGGGATTGAGCCGGT 7252 || ||||| ||||| || |||| |||| |||||||| |||||||| |||||||| Sbjct 145984 TGCGCCGACGGGGACGATTTCGCTGTATGCCGGGAACGTCAGTTCCGGGATCGAGCCGGT 145925 Query 7253 GTTCGCCTA 7261 || ||||| Sbjct 145924 CTTTGCCTA 145916 >seq6 Length=3173221 Score = 107 bits (118), Expect = 7e-19 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 6588 TGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGTGCTGTTCATCGAC 6647 |||||| | |||||| | | |||| || | || || ||||| | | | |||||| Sbjct 2944449 TGGGACACCATCATGACCAGCACCTACGACTATGCCGAACCGGGTTTCATCCTGATCGAC 2944508 Query 6648 GCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCCCTGC 6707 | |||| | ||||||||| ||||| |||||| |||| ||||||||||||||| Sbjct 2944509 AAGGTCAATCAGATGAACAACAACTGGTTCTGCGAAGACATCCGCGCCACCAACCCCTGT 2944568 Query 6708 GGTGAGCAACCCCTCCCGCCCTACGGTGCCTGTCTCCTGGGCTCCTTCAACCTG 6761 |||||||| ||||| || || ||||| ||| || ||||||||| | |||||| Sbjct 2944569 GGTGAGCAGCCCCTGCCCCCGTACGGCAGCTGCCTGCTGGGCTCCGTGAACCTG 2944622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195611099635736