Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq182 190 8e-44 >seq182 Length=269236 Score = 190 bits (210), Expect = 8e-44 Identities = 393/573 (69%), Gaps = 9/573 (2%) Strand=Plus/Minus Query 15258 GTGCCTGGAAAAAGATATATGCACGGCGGCGGCAACTTATATGGTCCAATTTCTGTGATC 15317 ||||| || || || || ||||| |||||||||| | || || || | || || | Sbjct 65424 GTGCCGGGGAACAGGTAGATGCAGGGCGGCGGCAGCCGGTAGGGGCCGACCTCGGTCAGG 65365 Query 15318 AGTTGAGGTGCGTCCTTAACCTTTGGGCAAGGCCGTCCAATGGTGGCGCAAACCATGTCC 15377 | | || | |||| || ||| ||||| ||||| | ||||| |||| | | |||| Sbjct 65364 CGATCGGGCGTGTCCC-AAGCTTGGGGCAGGGCCGGGCCGTGGTGCCGCAGATCCAGTCC 65306 Query 15378 CAAATAATGCAGCC-GTCCACCAGTTC-TTGCCGTGTAATGATCTCGGTGGAAAGGCGCG 15435 || | | ||||| ||| | | | |||| || | | ||||||| | || || | Sbjct 65305 CAGACCAC-CAGCCCGTCGATGCGCTGGTTGCGGTCGA-TCATCTCGGCGCTCAGCCGGG 65248 Query 15436 TGTGGATACCCGACCATGCGTTATGCCTCGGGTCTGCGCCGGGATTCGTGCAGACGCTCC 15495 ||||||| || ||||| |||| || | ||| || || || || |||| ||||| || Sbjct 65247 TGTGGATGCCGGACCAGACGTTGTGGCGCGGATCGGCCCCAGGGTTCGAACAGACCGACC 65188 Query 15496 AAACGATGAATTCATTTGCATTCGCCGGACGCTGAAAGATGTTCGTGTTGTTGCCATCCA 15555 | | ||||||||||| |||| | ||||| | ||||| || ||||||||||| |||| Sbjct 65187 AGAGGATGAATTCATCCGCATGGGGGGGACGTTCGAAGATATTGGTGTTGTTGCCGTCCA 65128 Query 15556 AGCAACCCTTTAGCTCGATGACA-GCGACACGATCTGATG-GAAGCGTCACGGAATAATC 15613 || ||||| |||||||| ||| ||| || | | || ||| |||||||||||| Sbjct 65127 GACAGCCCTTCAGCTCGAT-ACAGGCGGTGCG-GCCGTTGTTCAGCCGCACGGAATAATC 65070 Query 15614 GTGCCGGTTGGCTTCGCCGGATGACTCCCACTCTTTGATGAAGTGGTTATCCTGCATATA 15673 ||| |||||||||||||||| || | ||| | |||| || | ||||| | Sbjct 65069 GTGGCGGTTGGCTTCGCCGGCGGATTGCCAATGGACGATGTAGCCGCCCGATTGCATGTG 65010 Query 15674 GTTTAGGACGCGCTGAACAAACTCCCGCTTCTCACGCATGGTAGCTGAGAACTGGCCGCG 15733 | || || || |||||| | || || || ||| | || |||||||| ||||| Sbjct 65009 ATCCAGCACCAGCGCAACAAAGCCGCGTTTTTCCTTCATCGAGGCCGAGAACTGCCCGCG 64950 Query 15734 AATGCGTTCGATAGCGCCCCGAAACACGCCACTATTATAGAATTCCGCTTCGCCTAAGCC 15793 ||| |||||||| ||||| || |||| ||| | |||||| ||| |||| | | || Sbjct 64949 AATCCGTTCGATCGCGCCGCGGAACAGGCCGGATTGATAGAAATCCTGTTCGTCCAGCCC 64890 Query 15794 GTGAAGGCCGAGCTTATGGCCTTCAGCCTTCAG 15826 ||| ||| ||||| ||| | || | |||||| Sbjct 64889 ATGATCGCCTAGCTTGTGGGCCTCGGACTTCAG 64857 Score = 185 bits (204), Expect = 3e-42 Identities = 519/780 (67%), Gaps = 35/780 (4%) Strand=Plus/Minus Query 15953 TGGCGGACTACGGGAACGACCACACCATCGCCGGTCAGGTGGTACGCCTCGTTGTAGTTC 16012 ||||| || || |||||| | | || |||||||||||||| || ||||||||||| | Sbjct 64578 TGGCGCACGACCGGAACGGCGATGCCGTCGCCGGTCAGGTGATAGGCCTCGTTGTACCGC 64519 Query 16013 TCAGGGAGCTTGTAATCGTCAGGCAAGCCCATGAGGCGCGCCGTTTCGCGACTAGATATC 16072 || || |||||||| ||| |||| ||||| |||||||| |||||||| | || ||| Sbjct 64518 TCGGGCAGCTTGTAGCTGTCGGGCAGCCCCATCAGGCGCGCGGTTTCGCGGGTCGACATC 64459 Query 16073 AGGCGAGAGCGAACCTTGTCACGTTGCACAACTAAGATTGACTGCCGACTTGAACCGCCA 16132 ||||| || || | | | | | || || | ||| ||| || || ||||| Sbjct 64458 AGGCGCGACCGGATCGAATTGCCCTCGACCACCATGATCAGCTGGCGCGAGGATCCGCCC 64399 Query 16133 GCCGGAGTGCGGAGACAACCCGAGATATCATCAAATCGAATTTCCGCGCGCTGCACCTTG 16192 || || ||||| || || || | ||| ||||| || || || || ||||||||||||||| Sbjct 64398 GCAGGCGTGCGCAGGCAGCCGGCGATGTCATCGAACCGGATCTCGGCGCGCTGCACCTTG 64339 Query 16193 CGTTTGAATTCGTCGAGACGTGTGCGCTTGTAAATTCCGCCAACCATGCG---CTTGGCC 16249 || | |||| || ||||||||||| || ||| |||||||| ||||||| Sbjct 64338 ---ATGCCGTGTTCGACGCGGGTGCGCTTGTAGATCGTGCCGACCATGCGGGTCTTGGCC 64282 Query 16250 GATTGCTTCGCGAGGTT--GACCTTGGCCCGGTTGATATCGCTCATCATTCGAAGAAGCC 16307 || || | |||| |||||||||| |||||| ||| |||||| ||||| Sbjct 64281 ---TG--GCGGGCGGTTTCGACCTTGGCCAGGTTGACCTCGGACATCATGGACAGAAGGG 64227 Query 16308 GCGCCGTCTCTTCGCGGGTGTGCCACTCG-ACGCCTT--GCGGATTCTCTTCAATGATAT 16364 | ||||| | ||||||||||| | ||| | | | |||| || || | | Sbjct 64226 CGGTTGTCTCGGCCTTGGTGTGCCACTTGCACGAGGTCGGGGCATTC---TCGATCACGT 64170 Query 16365 CGGCAAAGGTCGTGT-TGCGTCTTGGCGGTTCGGGAAGATGCCACCATATCCAATTTGCC 16423 || | ||| || || | || | ||| ||| | |||||||| | ||| | | Sbjct 64169 CGAC-AAGATCCAGTGTCCGGGGAGACGGGCGGGGCATCTGCCACCACAGCCA----GTC 64115 Query 16424 CTACT----CTTTGGCGGCAGCTTACCCTGAGCGTTTTGCAAGGCCCGCGTATGCCACGG 16479 || || ||| |||||||| | | ||||| |||| || || ||||| || Sbjct 64114 CTTCTGCAGCTTGCGCGGCAGCCGGTCATAGGCGTTCTGCAGACCCTTGGTGTGCCAGGG 64055 Query 16480 -ATCATACGGTTG-TGCGGATAACAGTTCCTCGGGGATGAAAACATCCTCTCGCACAGCA 16537 | || || | ||| | | | | || |||| ||| | |||| ||||| || Sbjct 64054 CAGGGTAGGGGCGCTGCCGGT--CTGGTCGGCGGGAATGGCGATGTCCTGGCGCACGGCG 63997 Query 16538 ACGATAAAAAGTCGCGGGCGCGACTGCGGAACGAATAGCTCCGCGTCGATTATGAGTGCG 16597 || | || || ||||| ||||||||||| ||||| ||| |||| ||| | || ||| Sbjct 63996 ACCAGGAACAGGCGCGGCCGCGACTGCGGCACGAACAGCGCCGCATCGGCCACCAGCGCG 63937 Query 16598 CCGAATCTGTA-CGACGCTTGTTGCAGAGCCCCGCAAATCGTAGCGAAGTCCTTGCCGCC 16656 || | | ||| | | ||| |||| ||| |||| || | || ||||||| || Sbjct 63936 CCATAGCGGTAGCCCAGGTTG-CGCAGGGCCTCGCAGATGGCGGCAAAGTCCTGCCCCTT 63878 Query 16657 ATGCGATGTGAGCGTGCCGCATACATTCTCTAGCACGATGATTTCCGGTGCGCGCCCATC 16716 ||||| || |||||||| || || || ||| |||||||| | || ||||| || || Sbjct 63877 GTGCGAGGTCAGCGTGCCCAGCACGTTTTCCAGCGCGATGATTGCAGGCGCGCGGCCTTC 63818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185684785920968