Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq571 111 6e-20 seq5 102 3e-17 seq19 95.1 5e-15 seq285 87.8 7e-13 seq3 82.4 3e-11 >seq571 Length=34005 Score = 111 bits (122), Expect = 6e-20 Identities = 262/391 (67%), Gaps = 10/391 (3%) Strand=Plus/Plus Query 54663 ATGGAAACCGGCGTCAACGTGCAGAAGCGCCTCTACACCGAGGAGCATCTGGACGCGCCG 54722 |||| ||||||||||| | ||| |||||| | | | ||||| |||| ||| Sbjct 26376 ATGGGGACCGGCGTCAATGCGCAATTGCGCCTGAAGGCGCTCCACCATCTCGACGTGCCA 26435 Query 54723 TGGTTCCCGGCATCCGTCGAGCAGCGCGAGGGCCGCATCATCCGTCAGGGCAACCAGAAC 54782 ||| |||| | |||| |||||||||||||||||| || |||||||||||| | Sbjct 26436 TGGCTCCCCTCCCAGATCGAACAGCGCGAGGGCCGCATCGAGCGGCAGGGCAACCAGCAT 26495 Query 54783 AAGCAGGTGCGCATCCGCGCCTGGGCGAC-GAAGGGCAGCTACGACTCCACCATGTGGGG 54841 | || | ||| ||||| ||||| ||||| | | || | |||||| Sbjct 26496 GACGAGATCGATATCTTCGCCTATGCGACCGAAGGTTCGATG-GATGCGCAGATGTGGCA 26554 Query 54842 GATGAACGCCCGCAAGGCGCGGTTCATCGAACAGGCGCTCAACGGCGACGACAGC-GTGC 54900 || |||| |||||||| || ||||| | || || ||||||| ||| | |||| Sbjct 26555 GAACAACGAGCGCAAGGCCCGCTTCATTGCCGCTGCCCTTTCCGGCGAC-ACATCCGTGC 26613 Query 54901 GCTCGCTCGAGGACGTGTCCGAGGCATCGGCA------TTCGACATGGCCGCCGCGCTGG 54954 || |||||| || || ||||| ||| |||| |||||| || | | Sbjct 26614 GCCGGCTCGAAGATTTGGGCGAGGGCCAGGCCAATCAGTTCGCCATGGCGAAAGCCATCG 26673 Query 54955 CGTCGGGCGACGAGCGCTACATGAAGCTGGCGGGCCTGAAGGCCGACGTCGAGCGGCTGG 55014 |||||||||| ||||| ||| || |||||| ||| | |||||||||| ||||| | Sbjct 26674 CGTCGGGCGATCAGCGCCTGATGCAGAAGGCGGGACTGGAAGCCGACGTCGCCCGGCTTG 26733 Query 55015 AGCGCCTGAGCTACGCGCACCACGACGACCA 55045 | |||||| || |||||| | ||| || || Sbjct 26734 AACGCCTGCGCGCCGCGCATCGCGATGATCA 26764 Score = 93.3 bits (102), Expect = 2e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 53673 GAGCTGGGCGTCGACCGCCTGTTCGTCGACGAGTTCCACGAGTTCCGAAAACTCGACTTC 53732 ||| | || ||||||| | ||||||||||| || |||||||| |||||| ||| Sbjct 25199 GAGATTGGTGTCGACCAGATCATCGTCGACGAGGCGCAGGAGTTCCGGAAACTCTCCTTT 25258 Query 53733 GCGACGCAGCAGAGCAACA-TCAAGGGCATCGACCCGGCGGGCTCGCAGCGCGCGATGGA 53791 ||||| || || | || | |||||| |||| ||| ||||| |||||||| ||| Sbjct 25259 GCGAC-CAACATGTCGACCCTGAAGGGCGTCGATCCGAACGGCTCACAGCGCGCCTGGGA 25317 Query 53792 CCTGTTCATGAAGGTCCAATACCTGCGCAGCAAGAAGCCGGGCCGCGCGCTCGTGGCCGC 53851 || | | || || | | | | |||||| || ||||||||||| ||| || Sbjct 25318 TCTCTATGTCAAATCCCGCTTCATCGAAACCAAGAACCCCGGCCGCGCGCTGGTGCTGGC 25377 Query 53852 GTCCGGCACGCCGGTCACGAACACGATGGGCGA 53884 ||||||||||||| |||| |||||| | || || Sbjct 25378 GTCCGGCACGCCGATCACCAACACGCTTGGAGA 25410 >seq5 Length=3486096 Score = 102 bits (112), Expect = 3e-17 Identities = 212/316 (67%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 9973 GTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCG 10032 || ||||||||||| || || || ||| |||| |||||| ||||| || | || Sbjct 756256 GTAAACAAAGTCATTCTAGTGGGTAATTGCGGCAGCGACCCAGAAACAAAGTATTTACCC 756315 Query 10033 AGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGCG 10092 ||||| ||| | | || || | | ||||| |||| | || |||||| | Sbjct 756316 AGCGGAAGCGCGGTTACTAATCTCAGTATTGCTACCTCCGAAACATGGAAAGACAAGCAG 756375 Query 10093 AGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCC 10152 | |||| || | |||| || ||||||||||| || |||||| || || || Sbjct 756376 ACCGGCCAGCAGCAGGAGCGTACTGAATGGCACCGTGTTGTGTTCTTCAATCGTCTGGCT 756435 Query 10153 GAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGC 10212 ||||||| || ||| |||||| || || |||||| || ||||| | | Sbjct 756436 GAGATCGCCGGCGAATACCTGAAAAAAGGTAGCAAGGTCTATATAGAGGGTGCGTTGAGA 756495 Query 10213 ACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGATCGTCGCCGAG 10272 ||||| || ||||| | | | | ||||||||||| ||||| || ||||| || ||| | Sbjct 756496 ACGCGCAAATGGCAAGGTCAGGATGGCCAGGATCGTTACACCACAGAGATTGTTGCCAAC 756555 Query 10273 AAGATGCAGATGCTCG 10288 | ||||||||||||| Sbjct 756556 GAAATGCAGATGCTCG 756571 >seq19 Length=1029424 Score = 95.1 bits (104), Expect = 5e-15 Identities = 218/328 (66%), Gaps = 13/328 (4%) Strand=Plus/Minus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 ||| |||||||| || || |||| || || || |||||||| ||||||||| ||| Sbjct 986927 CGTAAACAAAGTAATTCTGATCGGTAACCTGGGACAGGACCCGGATACCCGCTACACCCC 986868 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGC 10091 | ||| | || | ||| | || || || ||| |||||||||| Sbjct 986867 TAACGGTAATGCCGTTGTGAACCTGAATCTGGCAACAGACGAAAGCTACAAGGATCGTCA 986808 Query 10092 GAGCGGCGAGATGAAG--GAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTC 10149 || ||| | || | ||| |||||||||||||| || | | |||||| || Sbjct 986807 GACCGGGCAATTGGTGCCGAAA--ACCGAATGGCACCGGGTTGTCATGTTCGGCAAGATC 986750 Query 10150 GCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATC 10209 ||||| | | || | |||| |||||||||||| || ||||||||| |||||| | Sbjct 986749 GCCGAAGTGGCCGGCCAGTATCTGCGCAAGGGCTCGAAGGTCTACATTGAGGGCAAGCTG 986690 Query 10210 CGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGATCGTCGCC 10269 | ||||| || |||||| | || | || |||||| |||||| |||||| | || | Sbjct 986689 CAGACGCGCAAATGGCAGAACAAGGAAGGTCAGGATGTCTACACCACCGAGGTTGTGGTG 986630 Query 10270 GAGA---------AGATGCAGATGCTCG 10288 || | ||||||||||||||| Sbjct 986629 GATATCAACGGCCAGATGCAGATGCTCG 986602 >seq285 Length=160511 Score = 87.8 bits (96), Expect = 7e-13 Identities = 207/304 (68%), Gaps = 13/304 (4%) Strand=Plus/Minus Query 9970 TCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTC 10029 || ||||| || ||||| || || |||||||| ||| |||||| || || | || Sbjct 22857 TCTGTCAATAAGGTCATTCTGGTAGGCAATCTGGGCCGCGACCCAGAGGTGCGTTCGTTC 22798 Query 10030 CCGAGCGGCGACGCAA--TCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACA 10087 | || |||| |||| ||| |||| | || |||| ||| |||| || || ||| Sbjct 22797 CAGAATGGCG--GCAAGGTCTGCAACCTGCGGATCGCCACGTCCGAGAACTGGAAAGACC 22740 Query 10088 AGGCGAGCGGCGAGATGAAGGAATCG-ACCGAATGGCACCGCGTC---AGCTTCTTCGG- 10142 | ||| || | | | | || || |||||||| ||| | ||||| ||| Sbjct 22739 GCAACACCGGTGA-ACGGCGCGAGCGTACGGAATGGCATTCCGTTGCGATCTTCT-CGGA 22682 Query 10143 -CCGCCTCGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGG 10201 |||| | ||| |||| ||| | || |||||||||||| | |||||| ||||||| Sbjct 22681 ACCGCTTGCCCGT-ATCGCCGAGCAATATCTGCGCAAGGGCTCCAAGGTCTATATCGAGG 22623 Query 10202 GCCGCATCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGA 10261 ||| | || || || ||||||||| | |||||||||||||||| |||||||| Sbjct 22622 GCCAGCTGGAAACCCGCAAATGGCAGGATCAGTCCGGCCAGGATCGCTATTCGACCGAGG 22563 Query 10262 TCGT 10265 |||| Sbjct 22562 TCGT 22559 >seq3 Length=4400433 Score = 82.4 bits (90), Expect = 3e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 8262 GGAGGCGTGGCAGAGTGGTCTAATGCAGCGGATTTGAAATCCGTCATACGTGCGAGCGTA 8321 ||||| ||||||||||||| ||||| |||| |||||| |||| ||||||||||| Sbjct 3517856 GGAGGAGTGGCAGAGTGGTTGAATGCGGCGGTCTTGAAAACCGTTGAGCGTGCGAGCGTT 3517797 Query 8322 TCGTGAGTTCGAATCTCACCGCCTCCGCCA 8351 || | ||||||||| | || ||||||||| Sbjct 3517796 CCGGGGGTTCGAATCCCTCCTCCTCCGCCA 3517767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197787080720856