Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq53 87.8 1e-12 seq63 84.2 2e-11 seq36 82.4 6e-11 >seq53 Length=625924 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| || ||| | || ||||| ||| || || || ||||| || || | || Sbjct 124722 AGCCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGG 124781 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| | ||||||| Sbjct 124782 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 124841 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || || | | | || || | |||||| || | ||| Sbjct 124842 TTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTG 124901 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | || || || || |||||||| Sbjct 124902 ATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 124939 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||| || || | || |||| |||| |||| Sbjct 124965 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGC 125024 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| || |||| ||| | |||||||||||| ||||| Sbjct 125025 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 125084 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || || | |||||| || | ||| || || || ||||| Sbjct 125085 TGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTG 125144 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 125145 AGGGTCTTGACGAAGATCTGCAT 125167 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||| || || | || |||| |||| |||| Sbjct 125193 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGC 125252 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| || |||| ||| | |||||||||||| ||||| Sbjct 125253 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 125312 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || || | |||||| || | ||| || || || ||||| Sbjct 125313 TGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTG 125372 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 125373 AGGGTCTTGACGAAGATCTGCAT 125395 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 48610 CGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCT 48669 |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| | |||||||| Sbjct 126126 CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCT 126185 Query 48670 TGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAA 48729 |||| ||||| || || || | | | || || | |||||| || | ||| | Sbjct 126186 TGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGA 126245 Query 48730 TCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGC 48764 | || || ||||| | || || || ||||||||| Sbjct 126246 TGGTCTTGCCCGTAAGGGTCTTCACGAAAATCTGC 126280 >seq63 Length=566113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 ||||| |||||||| || || | || |||| |||| |||||| ||||| || ||| Sbjct 329443 TTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATC 329502 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 || ||||| || |||| ||| | |||||||||||| ||||| || || || | Sbjct 329503 AGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCACGCCGTCG 329562 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | | || || | |||||| || | || | || || ||||| | ||| || ||||| Sbjct 329563 ATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACAAAG 329622 Query 48759 ATCTGC 48764 |||||| Sbjct 329623 ATCTGC 329628 >seq36 Length=729648 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| || ||| | || |||| |||| |||||| |||||||| ||| Sbjct 220064 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATC 220005 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 || ||||| || |||| ||| | |||||||||||| || ||||| || || | Sbjct 220004 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTTGCTTCACGCCGTCG 219945 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | | || || | ||| || || | || || || || ||||| | ||| || || ||| Sbjct 219944 ATCGTGTCCGAGGGCTCGACATCTAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAA 219885 Query 48759 ATCTG 48763 ||||| Sbjct 219884 ATCTG 219880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934201560436