Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq60 118 2e-21 seq2 95.1 3e-14 seq19 89.7 1e-12 >seq60 Length=599436 Score = 118 bits (130), Expect = 2e-21 Identities = 192/265 (72%), Gaps = 11/265 (4%) Strand=Plus/Minus Query 150527 GCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGA-CAATTTGCTACAAGAACT 150585 |||||||| || ||| | |||||||| ||||||||| || | | | ||| | |||||| | Sbjct 111811 GCTGGTACAAAATATAGAGGTGAATTTGAAGAACGTTTAAAACGAATTGTT-CAAGAATT 111753 Query 150586 AAAAGAACGCGATGATGTTATTCTGTTCATCGATGAAATCCATACTATTA-TGGGTGCTG 150644 |||||||| | || | ||| | | || ||||| | ||||| |||| | ||||||| Sbjct 111752 AAAAGAACAAAAAAATATAATTATTGTTATTGATGAGGTTCATAC-ATTAGTTGGTGCTG 111694 Query 150645 GTGCGACTGGCGGCGGTTCTTTGGATATGAGCAAT-ATGTTAAAACCTGCTCTATCTCGC 150703 |||| ||| || | | || ||| ||||| || |||||||||||| | | || Sbjct 111693 GTGCTGCTGAAGGAG---CATTAGATGC-AGCAAACATATTAAAACCTGCTTTGGCACGT 111638 Query 150704 GGTGAAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAA 150762 || ||| | | ||| || || |||||||| |||||||||| | |||| |||||||| Sbjct 111637 GGAGAATTACAATGT-ATTGGAGCAACAACAATCGATGAATATAGACAACATATTGAAAA 111579 Query 150763 AGATGCAGCACTACAGCGTCGTTTC 150787 |||| | || || | ||||||||| Sbjct 111578 AGATCCTGCTTTAGAACGTCGTTTC 111554 >seq2 Length=6328565 Score = 95.1 bits (104), Expect = 3e-14 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 284184 ATGGGGATGTGGTGAAATTGGCAGACACGCCAGATTTAGGTTCTGGTTCTTC--GGAGTG 284241 ||| ||||||||||||||||| ||||||||||||||||||||||||| | | || ||| Sbjct 3326231 ATGCGGATGTGGTGAAATTGGTAGACACGCCAGATTTAGGTTCTGGTGCCGCAAGGCGTG 3326172 Query 284242 CGAGTTCGAGTCTCGCCATCCCCACCATATT 284272 | |||| |||| | |||||| |||||| || Sbjct 3326171 GGGGTTCAAGTCCCTCCATCCGCACCATCTT 3326141 >seq19 Length=1029424 Score = 89.7 bits (98), Expect = 1e-12 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 324514 TGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAA 324573 |||||||||||||||| |||||||||| |||||||||||| || ||||| | |||||| Sbjct 837099 TGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCGGCAGTTCGAT 837040 Query 324574 CCCGTTTAGCTCCA-CAAAGTACT 324596 || | |||||||| |||| |||| Sbjct 837039 CCTGCCTAGCTCCACCAAATTACT 837016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147579637036536