Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq413 104 3e-17 seq3 102 1e-16 >seq413 Length=79672 Score = 104 bits (114), Expect = 3e-17 Identities = 189/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 145046 ATCGACCGCCTTCTGGGCCAGCGACGCGGCGGTGAAGATGAAGCGCTTG----TCGCCCT 145101 |||||| || ||||||||| | ||| |||||||| ||| |||| || |||| Sbjct 32066 ATCGACGGCTTTCTGGGCCGCTGTCGCCGCGGTGAAAATG----GCTTTCACATCACCCT 32121 Query 145102 TCAGGACCTTCAGCCAGGAGGCGACATAGGAGGCGTGATCCTCACGGACTTCCGGGGTCA 145161 ||| | |||||||| || ||||| ||||| || || ||| || | | | Sbjct 32122 CCAGCGCTTTCAGCCAACCCGCCACATACTCAGCGTGGTCTTCGCGGGGCTCGTTGCTGA 32181 Query 145162 ACCCAAGAATGGCGCAGAGGAAGGCCGAGCCCAGTTCGGCGACCAGTTCCTCGGCGGCGT 145221 |||||| ||| || ||||| || | ||| || ||||| || || ||| |||| Sbjct 32182 CACCAAGATCGGCACACAGGAACGCGGCAGACAGCTCCGCGACAAGCTCTTCGAACGCGT 32241 Query 145222 AGGCCTCGTCCCCGAAGCGCTTGCCGAACTCGCGGTTCAGGCGGTCCTCGCGACCGGTCC 145281 | || ||||| ||||| || ||||| || | ||| | ||| | | |||| |||||||| Sbjct 32242 ATGCTTCGTCGCCGAACCGTTTGCCAAATTTGCGATCCAGTCTCTTCTCGTTACCGGTCC 32301 Query 145282 AGTGGACGAACTCGTGGCCGAGGGTGGCGTAGTAGC 145317 |||| || ||||||| ||| |||| ||||||| Sbjct 32302 AGTGCGCGCACTCGTGCAGGAGTGTGGAATAGTAGC 32337 >seq3 Length=4400433 Score = 102 bits (112), Expect = 1e-16 Identities = 385/590 (65%), Gaps = 18/590 (3%) Strand=Plus/Plus Query 86171 TTGGGCGAGCGCAGGGCGAACTCGGTGTCGTCGCGCACCGCGATCATGAACTCGTCGGTG 86230 || |||||| ||||| ||||||| || | |||||| |||||| |||||||| Sbjct 1114159 TTCGGCGAGAGCAGGTCGAACTCTTCATCATTCTTCACCGCTTCCATGAAGGCGTCGGTG 1114218 Query 86231 ACGTTGACGGCGTTGTGCAGGTTG-GTGATCTTGCGGTTCTGGTCGCCGCCAGTAGGCTT 86289 | |||| | | ||||||||| | || ||| ||||| |||||| || ||||| Sbjct 1114219 ATATTGATACCATGGTGCAGGTTTAGAGA-CTTACGGTTGAAGTCGCC---AGATGGCTT 1114274 Query 86290 GCGGGCCGTGATGAACTCGCGGATTTCCGGGTGGCTGATGTCCAGATAG-ACGGCGTTGG 86348 ||| | | || || ||||||||||||| || ||||| || ||| || | Sbjct 1114275 ACGGACTTCAAGAAATTCTTCGATTTCCGGGTGGTGGACATCCAGGTAACACGCCGCAG- 1114333 Query 86349 AGCCCCGGCGCGTGCCGCCTTGGCTGACGGCGAGAATCAGGCGATCGTCCACCGCCATGA 86408 |||| |||||| |||||||| | || || ||| ||| || |||| Sbjct 1114334 AGCCACGGCGCAGAGATCCTTGGCTAATCGCCAGGGTCAATGAATCCATGACGCGGATGA 1114393 Query 86409 ACGGGATCACGCCGGTCGACTGCGAACCCTTC-GAGGTCTT-CTCGCCCAGGCCGCGCAG 86466 | || || | |||| | | ||| | | ||| | | ||| |||||| | ||| | Sbjct 1114394 ATGGAATGATGCCGCTTGTCTG--ACCGCTTTTGCCGACTTTCTCGCCGATCGAGCGGAC 1114451 Query 86467 GGCGCCGTAATAGGAGCCGATGCCGCCGCCCATCGACGAGAGCCAGATGACCTC-GTCAT 86525 ||| |||||| || |||||||| || | || | |||||| | ||| ||| Sbjct 1114452 ATTGCCCCAATAGGTACCAATGCCGCCACCATTAGAGGCGAGCCAAACATTCTCTGTCCA 1114511 Query 86526 AGTGCTCGGAGATCGAC-TCGCGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAGATCGGC 86584 || || || | | | || |||||| ||| | | | |||||| ||||| ||| Sbjct 1114512 GGT--TCCGACAATGTCGTCCAAGCTGTCGCCGACTTGGTTCAAGAAGCAAGAGATTGGC 1114569 Query 86585 AGGCCGCGCGCGGACCCGCCGTTCGACAGCAGGGGCGTGGCGAACATGAACCAGAGGTTC 86644 || || || ||| ||||| || ||||| | ||||| || |||||||||||| ||| Sbjct 1114570 AGACCACGATCGGCGCCGCCATTAGACAGAACCGGCGTTGCTGGCATGAACCAGAGCTTC 1114629 Query 86645 GAGACATAGTCGTAGAGCCGCTGGCCGTGCTCGGCGTCATCCGCGAAGGCCGCACTCGCG 86704 || | |||||||| || || || |||| || ||||| || |||||||| | || Sbjct 1114630 GACATGTAGTCGTAAAGACGTTGAGCGTGATCAGCGTCGTCAGCGAAGGCTTCTGAGACG 1114689 Query 86705 CGCGCGAAGGCCTCCTGGGGCGAGCTTTCCCCAGGCAGCAGATAGCGTTC 86754 |||||||| || ||| || || || ||||||| |||||| || Sbjct 1114690 CGCGCGAACATATCTTGGTATGA---CTCGCCGGGCAGCAAATAGCGATC 1114736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690137685182400