Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq3 120 5e-22 seq2 111 3e-19 seq19 98.7 2e-15 seq5 98.7 2e-15 seq201 95.1 2e-14 seq6 89.7 9e-13 >seq3 Length=4400433 Score = 120 bits (132), Expect = 5e-22 Identities = 365/557 (66%), Gaps = 28/557 (5%) Strand=Plus/Plus Query 113556 GTTCTTCACGGGGAAGGAGCCCGACAGCGTCTTATGCAGATAGGCGTTGGCGCGCCACGG 113615 ||||||||||| ||| || || ||||| ||||| ||| || |||| || | || Sbjct 1113441 GTTCTTCACGGTGAACGACCCGGACAGAGTCTTGTGCGTGTAAACGTTTGCCGGAATAGG 1113500 Query 113616 CTCGATCGACGGCGA-GGTATTGCCGCAGAGGATAGACGACGACGCGTTGGGAGCGATCG 113674 |||||| | | ||| ||| |||||| | ||| || ||| ||| | || |||| | Sbjct 1113501 CTCGAT-GCCAGCGCTGGTGCCGCCGCAAATGATTGAGATCGATGCGGTTGGTGCGACAG 1113559 Query 113675 CCATCTTGTGGGCGAAGCGCTCGCCCGTGCCGATCATGTCCGGCG-CCTC------GCCG 113727 |||| ||||| ||||||| | | ||||| | | |||| |||| |||| Sbjct 1113560 CCATTTTGTGACTGAAGCGCGCCATCATGCCGG-CTTCGGCGGCATCCTCACACGCGCCG 1113618 Query 113728 CGTTCGGCGCCCAGCTTCAGAGAAGCGGCATCCGCCAGGGTGCGGATGTGCTTGAAGATC 113787 || || | ||||||| ||| ||||||||||| ||| ||||||||||| | | Sbjct 1113619 CGCTCTTTCGCGAGCTTCACAGACGCGGCATCCGCGCCTTGGCGAATGTGCTTGAACAGC 1113678 Query 113788 GCACGGTTCACGTTGCGAGCCTT----ATGCGACT--CGAA---CCGGATCATATGCTTC 113838 ||| |||| | | |||| ||| || | | | || ||| | || Sbjct 1113679 ------TTCTCGTTCCAAACCTTCGCCATGGCGCTTTCCATTGGCAGGTTCAGAGACT-- 1113730 Query 113839 TGAAGATAGGCGTGGAAGCCCAGCAGGCCCAGGCCGACCGAACGCTCCTGCGTAGCCGAG 113898 |||| ||| ||||||||||| ||||||| || || || ||||| || | |||||| Sbjct 1113731 -GAAGGAAGGAGTGGAAGCCCATGAGGCCCAATCCAACAGAGCGCTCGCGCTTGGCCGAG 1113789 Query 113899 TAGATCGCGTAGGCCAACGCCGGCGGAGCGTTGTCGATGAACACCTGGAGGCAGTTGTCC 113958 || | ||| ||||| | ||||| ||| |||||||| | || || |||||| Sbjct 1113790 TAAACGGCGCGGGCCATTTCTGGCGGTGCGCGATCGATGAAGTCTTGCAGAACGTTGTCG 1113849 Query 113959 AGCATACGCATCAGGTCTTCGATGAAGTGTGGGTCATCGACCCACTCGTCGAACTTCTCG 114018 || | ||| | ||||||| ||||| ||| | | |||||| ||||||| Sbjct 1113850 AGGAAACGGTAGACATCTTCGAGGAAGTTCTCGTCTTTGCTCCACTCAAAATACTTCTCA 1113909 Query 114019 GCGTTGACGCTCGACAGGCAGCAGACCGCCGTACGCTTCTTGCCTTGATCATCGCGCCCG 114078 || |||| |||||||||||| ||||| || || | | ||| || || |||| Sbjct 1113910 GCATTGATAGACGACAGGCAGCATACCGCTGTCCGGTCTTCGCCCATATGGTCAATCCCG 1113969 Query 114079 GTCGCCAGCGTGATCTC 114095 |||| ||| ||||| || Sbjct 1113970 GTCGGCAGAGTGATTTC 1113986 Score = 86.0 bits (94), Expect = 1e-11 Identities = 178/260 (68%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 110916 TCCGGTCGAGCCGAAGCCGCCCGTGCCACGCTCGGTCTGGTCAAGCTCCGCAACGACGT- 110974 |||||| ||||| || ||||| ||||||| || || | ||| ||| | | || | | Sbjct 872668 TCCGGTTGAGCCAAAACCGCCGCTGCCACGGTCCGTTTCGTCGAGCGACCCCACTTCTTG 872727 Query 110975 CGAAACGGATGCGGACATAGGGCGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGATTGA 111034 | |||| || ||| ||||||| | ||| ||||||| || || || || Sbjct 872728 CCAAACA-ATTCGGGTGACTGGCGCGAGCAGCATCTGCCCAATGCGCTCCCCACGCGCGA 872786 Query 111035 TGACGAACGGAT-TGCGGCCGTGGTTGATCAGGATCACCTTGATCTCGCCGCGATAGTCG 111093 || ||| | | |||| || || ||||||||||| ||||| | ||| |||||||| || Sbjct 872787 TGGTGAATGCGTCTGCG-CCATGATTGATCAGGATGACCTTCAACTCACCGCGATAATCA 872845 Query 111094 CTGTCGACGGTACCGGGCGAATTCAGGACAGTGATAGACGACTTGGCGGCGAGGCCCGAG 111153 ||||||| || ||||| || || ||| || || ||| ||||| | ||| ||| Sbjct 872846 CTGTCGATCGTTCCGGGAGAGTTGAGGCACGTAATGCCATGCTTCGCGGCCAAGCCGGAG 872905 Query 111154 CGCGGCCGGACTTGCAGTTC 111173 ||||| || | ||| | ||| Sbjct 872906 CGCGGGCGCATTTGAATTTC 872925 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 132959 TGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTC 133018 ||| ||||| |||||||| |||||||||||| ||||||||||| ||||||| ||||| Sbjct 2145905 TGACGCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTC 2145964 Query 133019 AAATCCCTCCCCCGCATCCA 133038 |||||| | |||||| ||| Sbjct 2145965 AAATCCTACTCCCGCACCCA 2145984 >seq2 Length=6328565 Score = 111 bits (122), Expect = 3e-19 Identities = 210/300 (70%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 110917 CCGGTCGAGCCGAAGCCGCCCGTGCCACGCTCGGTCT-GGTCAAGCTCCGCAACGACGTC 110975 || ||||||||||| ||||| | || || || |||| || |||| | |||| | | Sbjct 5723852 CCAGTCGAGCCGAAACCGCCGGAACCGCGATCCGTCTCGGACAAGATAT-CAACTTCA-C 5723909 Query 110976 GAAACGGATGCGGACAT--AGGGCGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGATTG 111033 ||| || ||| || |||| || | || |||||| ||||| |||||||| | Sbjct 5723910 GAAT-GGTTGCTTGCAGGCAGGGGGCAATCACCATCTGGGCGATGCGTTCGCCGCGGGCG 5723968 Query 111034 ATGACGAACGGATTGCGGCCGTGGTTGATCAGGATCACCTTGATCTCGCCGCGATAGTCG 111093 | ||||||| | ||| | |||||||||||||| || | ||||||||||||||| Sbjct 5723969 ACCTCGAACGGGCCGTCACCGAGATTGATCAGGATCACTTTCACCTCGCCGCGATAGTCC 5724028 Query 111094 CTGTCGACGGTACCGGGCGAATTCAGGACAGTGATAGACG-ACTTGGCGGCGAGGCCCGA 111152 |||| || ||||||| ||||||||| || | | || |||||||| || || || Sbjct 5724029 GCATCGATCGTGCCGGGCGTATTCAGGACCGTTA-CGCCGTGTTTGGCGGCAAGTCCGGA 5724087 Query 111153 GCGCGGCCGGACTTGCAGTTCCAGGCCCGCCGGCAGGGCGACCGTGACGCCGGTCGGGAT 111212 |||||||| || || ||| | ||| || |||| || | || | ||||||||||| Sbjct 5724088 ACGCGGCCGAACCTGACCTTCAAAGCCGGCGGGCAACGCCATCGCCAGCCCGGTCGGGAT 5724147 Score = 93.3 bits (102), Expect = 8e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 191910 ATCCGGTCGACATCCATGTGGGCAAGCGCATCCGCATGCGTCGCAAGACTCTCGGCGTCA 191969 |||| | ||||| || || |||| ||| | || || | || | || || ||| | | Sbjct 340822 ATCCAATTGACATTCACGTCGGCAGCCGCGTTCGGCTGAGACGTATGATGCTAGGCATGA 340881 Query 191970 GCCAGGAACAACTCGCCAGCGCGCTGGGTCTGACCTTCCAGCAGGTGCAGAAGTACGAGA 192029 | |||||| | |||| | || ||||| | |||||||||||| | ||||| ||||| | Sbjct 340882 GTCAGGAAAAGCTCGGCGAAGCCCTGGGCATCACCTTCCAGCAGATCCAGAAATACGAAA 340941 Query 192030 AGGGCGGCAATCGCGTCAGCGCGAGCAAGCTGCACGGCATCGGCAAATTCCTGGGCGTTC 192089 | ||| ||| ||| || |||| ||| ||||| ||||| || |||| || | Sbjct 340942 AAGGCACCAACCGCATCGGCGCCAGCCGTCTGCAGCACATCGCCACCATCCTCAAGGTGC 341001 Query 192090 CGGTCGCCTTTTTCTTCGAAG 192110 ||||| |||| |||||||||| Sbjct 341002 CGGTCTCCTTCTTCTTCGAAG 341022 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 ||||| |||||||| |||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 30537 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGCAGGTTCAAAT 30596 Query 133023 CCCTCCCCCGCATCCA 133038 || | |||||| ||| Sbjct 30597 CCTGCTCCCGCAACCA 30612 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 ||||| |||||||| |||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 5614567 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGCAGGTTCAAAT 5614508 Query 133023 CCCTCCCCCGCATCCA 133038 || | |||||| ||| Sbjct 5614507 CCTGCTCCCGCAACCA 5614492 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 ||||| |||||||| |||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 6278198 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGCAGGTTCAAAT 6278257 Query 133023 CCCTCCCCCGCATCCA 133038 || | |||||| ||| Sbjct 6278258 CCTGCTCCCGCAACCA 6278273 >seq19 Length=1029424 Score = 98.7 bits (108), Expect = 2e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 132957 TTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGT 133016 |||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||| Sbjct 190200 TTTGATGCGGGGTGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGT 190141 Query 133017 TCAAATCCCTCCCCCGCATCCACA 133040 || ||||| ||||||| ||||| Sbjct 190140 TCGAATCCAGCCCCCGCTACCACA 190117 >seq5 Length=3486096 Score = 98.7 bits (108), Expect = 2e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 132957 TTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGT 133016 |||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||| Sbjct 1082365 TTTGATGCGGGGTGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGT 1082424 Query 133017 TCAAATCCCTCCCCCGC 133033 |||||||| ||||||| Sbjct 1082425 TCAAATCCTGCCCCCGC 1082441 >seq201 Length=246981 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 71166 TCGAGATCGTGCCCTTCGAGTTCATGCGCGGGCGCACCTTCGACAACGCCTTCGTGATCC 71225 ||||||||| |||| | | ||||||||||| |||||| | ||||||||||||| | | Sbjct 201782 TCGAGATCGCGCCCCTGGCCTTCATGCGCGGTCGCACCCTGTCCAACGCCTTCGTGGTGC 201723 Query 71226 TCGACGAGGCTCAGAACGCGTCGTTCGACGACCTGGAACTGTTCGTGACCCGTACCGGTC 71285 | |||||||| |||||||| | | | || | ||||| ||||||| || Sbjct 201722 TGGACGAGGCGCAGAACGCCACCACCATGCAGATGAAGATGTTCCTGACCCGCCTGGGCG 201663 Query 71286 AGGGTTCGCAAGTCGTGATCTGCGGCGATCCCGGCCAGATCGACATCCCG 71335 |||| |||| | |||||| |||||| | | ||||||||||| | ||| Sbjct 201662 AGGGATCGCGCATGGTGATCACCGGCGACCGCAGCCAGATCGACCTGCCG 201613 >seq6 Length=3173221 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 132955 AGTTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGG 133014 ||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| | Sbjct 2054031 AGTTTGATGCGGGGTAGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGGAGGTCGTTG 2054090 Query 133015 GTTCAAATCCCTCCCCCGC 133033 |||| ||||| ||||||| Sbjct 2054091 GTTCGAATCCAGCCCCCGC 2054109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895758203737440