Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq3 127 3e-24 seq413 102 1e-16 >seq3 Length=4400433 Score = 127 bits (140), Expect = 3e-24 Identities = 393/602 (65%), Gaps = 22/602 (4%) Strand=Plus/Plus Query 83165 GTGCTGGATCGAACCCTCGGCCGCGACGATCGACTTCCAGACCGCCTCGGTGTCCAGGCC 83224 |||||| | || || ||| | | | ||||||| |||||||| | || |||| | |||| Sbjct 1113351 GTGCTGCACAGATCCTTCGTGCTCCAAGATCGACGTCCAGACCTCATCAGTGTTCTGGCC 1113410 Query 83225 CAGTTCGCCCAGGCGCTTCTTCAGCCAGCGGTTCTTGACGGCGAACGAGCCCGACAGAGT 83284 | || | || |||| || | |||||| |||| |||||| || |||||||| Sbjct 1113411 CTTCTCTTCGAGCATTTTCTCAAGATACTTGTTCTTCACGGTGAACGACCCGGACAGAGT 1113470 Query 83285 CTTGTGCAGGAAGGTGTTGGCCGGGATCGGCTCGATCGACGGCG-AGGTGCCCCCGCAAA 83343 ||||||| | | ||| ||||| || |||||||| | | ||| |||||| ||||||| Sbjct 1113471 CTTGTGCGTGTAAACGTTTGCCGGAATAGGCTCGAT-GCCAGCGCTGGTGCCGCCGCAAA 1113529 Query 83344 GGATCGAGGACGAGGCGTTGGGCGCCACGGCCAGCTTGTGGGCGAACCGCTCGCCCGTGC 83403 ||| ||| ||| ||| | || || || |||| ||||| ||| ||| | | ||| Sbjct 1113530 TGATTGAGATCGATGCGGTTGGTGCGACAGCCATTTTGTGACTGAAGCGCGCCATCATGC 1113589 Query 83404 CTTCCATGTCCGGCG----CCT------CGCCGCGCTCCTTGCCCAGCAGCAGGGAAGCC 83453 | | | ||||| ||| |||||||||| || | ||| || || || Sbjct 1113590 CGGC----TTCGGCGGCATCCTCACACGCGCCGCGCTCTTTCGCGAGCTTCACAGACGCG 1113645 Query 83454 GCGTCGGCCTGCTTGCGCATGTGGACGAACAGTTCCAGGTTC--AGCCGGCG-GGCGGCG 83510 || || || | ||| ||||| |||||| | | |||| | || || |||| Sbjct 1113646 GCATCCGCGCCTTGGCGAATGTGCTTGAACAGCTTCTCGTTCCAAACCTTCGCCATGGCG 1113705 Query 83511 TGACTCTCGAACGGGATGTCCAGCATCTGGAGCAGCGAGTGGAAGCCGAGCAGGCCCAGG 83570 || || | || | || ||| ||| || | ||||||||||| | ||||||| Sbjct 1113706 ---CTTTCCATTGGCAGGTTCAGAGACTGAAGGAAGGAGTGGAAGCCCATGAGGCCCAAT 1113762 Query 83571 CCCACCGACCGTTCGCGCACGGCGCTGTAGGCGGCGCGGTGCATCTCGTCCGGCGCGTTG 83630 || || || || |||||| ||| ||| |||||||| ||| || ||| ||| Sbjct 1113763 CCAACAGAGCGCTCGCGCTTGGCCGAGTAAACGGCGCGGGCCATTTCTGGCGGTGCGCGA 1113822 Query 83631 TCGATGAACACCTGGAGGCAGTTGTCCAGCATGCGCAGCAGGTCTTCGATGAAGGTCGGG 83690 |||||||| | || || |||||| || | || | ||||||| |||| || | Sbjct 1113823 TCGATGAAGTCTTGCAGAACGTTGTCGAGGAAACGGTAGACATCTTCGAGGAAGTTCTCG 1113882 Query 83691 TGATCCCGCCACTCCGGCCACTTCTCGGCGTTGACGCTGGAAAGGCAGCAGACGGCGGTC 83750 | | | |||||| ||||||| || |||| || |||||||| || || ||| Sbjct 1113883 TCTTTGCTCCACTCAAAATACTTCTCAGCATTGATAGACGACAGGCAGCATACCGCTGTC 1113942 Query 83751 CG 83752 || Sbjct 1113943 CG 1113944 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 85286 GAAGCAGGAGATCGGCAGGCCGCGCGCGGACCCGCCGTTCGACAGCAGGGGCGTGGCGAA 85345 |||||| ||||| ||||| || || ||| ||||| || ||||| | ||||| || Sbjct 1114554 GAAGCAAGAGATTGGCAGACCACGATCGGCGCCGCCATTAGACAGAACCGGCGTTGCTGG 1114613 Query 85346 CATGAACCAGAGGTTCGAGACATAGTCGTAGAGCCGCTGGCCGTGCTCGGCGTCATCCGC 85405 |||||||||||| ||||| | |||||||| || || || |||| || ||||| || || Sbjct 1114614 CATGAACCAGAGCTTCGACATGTAGTCGTAAAGACGTTGAGCGTGATCAGCGTCGTCAGC 1114673 Query 85406 GAAGGCCGCACTCGCGCGCGCGAAGGCCTCCTGGGGCGAGCTTTCCCCAGGCAGCAGATA 85465 |||||| | |||||||||| || ||| || || || ||||||| ||| Sbjct 1114674 GAAGGCTTCTGAGACGCGCGCGAACATATCTTGGTATGA---CTCGCCGGGCAGCAAATA 1114730 Query 85466 GCGTTC 85471 ||| || Sbjct 1114731 GCGATC 1114736 >seq413 Length=79672 Score = 102 bits (112), Expect = 1e-16 Identities = 188/275 (68%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 147391 TCGACCGCCTTCTGGGCCAGCGACGCGGCGGTGAAGATGAAGCGCTT----ATCGCCCTT 147446 ||||| || ||||||||| | ||| |||||||| ||| |||| ||| |||| Sbjct 32067 TCGACGGCTTTCTGGGCCGCTGTCGCCGCGGTGAAAATG----GCTTTCACATCACCCTC 32122 Query 147447 CAGGACCTTCAGCCAGGAGGCGACGTAGGAGGCGTGGTCTTCGCGGACTTCCGGGGTCAG 147506 ||| | |||||||| || || || ||||||||||||||| || | | | Sbjct 32123 CAGCGCTTTCAGCCAACCCGCCACATACTCAGCGTGGTCTTCGCGGGGCTCGTTGCTGAC 32182 Query 147507 GCCGAGGATGGCGCAGAGGAAGGCCGAGCCCAGTTCGGCGACCAGTTCCTCGGCGGCGTA 147566 || || ||| || ||||| || | ||| || ||||| || || ||| ||||| Sbjct 32183 ACCAAGATCGGCACACAGGAACGCGGCAGACAGCTCCGCGACAAGCTCTTCGAACGCGTA 32242 Query 147567 GGCCTCGTCACCGAAGCGCTTGCCGAACTCGCGGTTCAGGCGGTCCTCGCGACCTGTCCA 147626 || ||||| ||||| || ||||| || | ||| | ||| | | |||| ||| ||||| Sbjct 32243 TGCTTCGTCGCCGAACCGTTTGCCAAATTTGCGATCCAGTCTCTTCTCGTTACCGGTCCA 32302 Query 147627 GTGGACGAACTCGTGGCCGAGGGTGGCGTAGTAGC 147661 ||| || ||||||| ||| |||| ||||||| Sbjct 32303 GTGCGCGCACTCGTGCAGGAGTGTGGAATAGTAGC 32337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700438390930080