Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-21 >seq3 Length=4400433 Score = 118 bits (130), Expect = 2e-21 Identities = 385/588 (65%), Gaps = 14/588 (2%) Strand=Plus/Plus Query 86276 TTGGGCGAGCGCAGGGCGAAGTCGGTGTCGTCGCGCACCGCGATCATGAACTCGTCGGTG 86335 || |||||| ||||| |||| || || | |||||| |||||| |||||||| Sbjct 1114159 TTCGGCGAGAGCAGGTCGAACTCTTCATCATTCTTCACCGCTTCCATGAAGGCGTCGGTG 1114218 Query 86336 ACGTTGACCGCATTGTGCAGGTTG-GTGATCTTGCGGTTGTGGTCCCCGCCCGTCGGCTT 86394 | |||| ||| ||||||||| | || ||| |||||| ||| ||| | ||||| Sbjct 1114219 ATATTGATACCATGGTGCAGGTTTAGAGA-CTTACGGTTGAAGTC---GCCAGATGGCTT 1114274 Query 86395 GCGCGCGGTGATGAACTCGCGGATTTCGGGGTGGTGGATGTCCAGGTAG-ACGGCGTTGG 86453 || | | || || |||||| |||||||||| |||||||| ||| || | Sbjct 1114275 ACGGACTTCAAGAAATTCTTCGATTTCCGGGTGGTGGACATCCAGGTAACACGCCGCAG- 1114333 Query 86454 AGCCCCGGCGCGTACCGCCCTGGCTGACGGCCAGGATCAGGCGGTCGTCCACCGCCATGA 86513 |||| |||||| | || ||||| | |||||| ||| || || |||| Sbjct 1114334 AGCCACGGCGCAGAGATCCTTGGCTAATCGCCAGGGTCAATGAATCCATGACGCGGATGA 1114393 Query 86514 ACGGGATGACGCCGGTCGACTGCGAACCCTTGGAGGTCTTCTCGCCCAGGCCGCGCAGGG 86573 | || |||| |||| | | ||| | ||| | |||||||| | ||| | Sbjct 1114394 ATGGAATGATGCCGCTTGTCTGACCGCTTTTGCCGACTTTCTCGCCGATCGAGCGGACAT 1114453 Query 86574 CGCCGTAATAGGAGCCGATGCCGCCGCCCATCGACGACAGCCAGATGACCTC-GTCATAG 86632 ||| |||||| || |||||||| || | || | ||||| | ||| ||| | Sbjct 1114454 TGCCCCAATAGGTACCAATGCCGCCACCATTAGAGGCGAGCCAAACATTCTCTGTCCAGG 1114513 Query 86633 TGCTCGGAGATCGAC-TCGCGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAGATCGGCAG 86691 | || || | | | || |||||| ||| | | | |||||| ||||| ||||| Sbjct 1114514 T--TCCGACAATGTCGTCCAAGCTGTCGCCGACTTGGTTCAAGAAGCAAGAGATTGGCAG 1114571 Query 86692 GCCACGGGCCGAGCCGCCGTTCGACAGCAGCGGGGTGGCGTACATGAACCAGAGGTTCGA 86751 ||||| | | |||||| || ||||| | ||| || || |||||||||||| ||||| Sbjct 1114572 ACCACGATCGGCGCCGCCATTAGACAGAACCGGCGTTGCTGGCATGAACCAGAGCTTCGA 1114631 Query 86752 GACGTATTCGTACAGACGCTGGCCGTGCTCGGCGTCATCCGCAAAGGCCGCACTCGCGCG 86811 | ||| ||||| ||||| || |||| || ||||| || || ||||| | |||| Sbjct 1114632 CATGTAGTCGTAAAGACGTTGAGCGTGATCAGCGTCGTCAGCGAAGGCTTCTGAGACGCG 1114691 Query 86812 CGCGAAGGCCTCCTGGGGGGAAGTTTCCCCAGGCAGCAGATAGCGTTC 86859 |||||| || | || | | || || ||||||| |||||| || Sbjct 1114692 CGCGAACATATCTT---GGTATGACTCGCCGGGCAGCAAATAGCGATC 1114736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715769450649600