Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq413 107 3e-18 seq3 95.1 2e-14 >seq413 Length=79672 Score = 107 bits (118), Expect = 3e-18 Identities = 189/275 (69%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 149196 TCGACCGCCTTCTGGGCCAGCGACGCGGCGGTGAAGATGAAGCGCTTG----TCGCCCTT 149251 ||||| || ||||||||| | ||| |||||||| ||| |||| || |||| Sbjct 32067 TCGACGGCTTTCTGGGCCGCTGTCGCCGCGGTGAAAATG----GCTTTCACATCACCCTC 32122 Query 149252 CAGGACCTTCAGCCAGGAGGCGACATAGGAGGCGTGGTCTTCGCGGACTTCCGGGGTCAG 149311 ||| | |||||||| || ||||| ||||||||||||||| || | | | Sbjct 32123 CAGCGCTTTCAGCCAACCCGCCACATACTCAGCGTGGTCTTCGCGGGGCTCGTTGCTGAC 32182 Query 149312 GCCGAGGATGGCGCAGAGGAAGGCCGAGCCCAGTTCGGCGACCAGTTCCTCGGCGGCGTA 149371 || || ||| || ||||| || | ||| || ||||| || || ||| ||||| Sbjct 32183 ACCAAGATCGGCACACAGGAACGCGGCAGACAGCTCCGCGACAAGCTCTTCGAACGCGTA 32242 Query 149372 GGCCTCGTCACCGAAGCGCTTGCCGAACTCGCGGTTCAGGCGGTCCTCGCGACCGGTCCA 149431 || ||||| ||||| || ||||| || | ||| | ||| | | |||| ||||||||| Sbjct 32243 TGCTTCGTCGCCGAACCGTTTGCCAAATTTGCGATCCAGTCTCTTCTCGTTACCGGTCCA 32302 Query 149432 GTGGACGAACTCGTGGCCGAGGGTGGCGTAGTAGC 149466 ||| || ||||||| ||| |||| ||||||| Sbjct 32303 GTGCGCGCACTCGTGCAGGAGTGTGGAATAGTAGC 32337 >seq3 Length=4400433 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 86695 GAAGCAGGAGATCGGCAGGCCGCGCGCGGACCCGCCGTTCGACAGCAGGGGCGTGGCGAA 86754 |||||| ||||| ||||| || || ||| ||||| || ||||| | ||||| || Sbjct 1114554 GAAGCAAGAGATTGGCAGACCACGATCGGCGCCGCCATTAGACAGAACCGGCGTTGCTGG 1114613 Query 86755 CATGAACCAGAGGTTCGAGACATAGTCGTAGAGCCGCTGGCCGTGCTCGGCGTCATCCGC 86814 |||||||||||| ||||| | |||||||| || || || |||| || ||||| || || Sbjct 1114614 CATGAACCAGAGCTTCGACATGTAGTCGTAAAGACGTTGAGCGTGATCAGCGTCGTCAGC 1114673 Query 86815 GAAGGCCGCACTCGCGCGCGCGAAGGCCTCCTGGGGCGAGCTTTCCCCAGGCAGCAGATA 86874 |||||| | |||||||||| || ||| || || || ||||||| ||| Sbjct 1114674 GAAGGCTTCTGAGACGCGCGCGAACATATCTTGGTATGA---CTCGCCGGGCAGCAAATA 1114730 Query 86875 GCGTTC 86880 ||| || Sbjct 1114731 GCGATC 1114736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709715106047360