Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq318 801 0.0 seq60 672 0.0 >seq318 Length=132058 Score = 801 bits (888), Expect = 0.0 Identities = 747/946 (79%), Gaps = 6/946 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCA 162595 |||||||||||||||| | ||||||||| || || | | ||||||| |||| Sbjct 95098 TCGGTTGGTTCGGTGTTCTTATGATCCCTA-CT--CTATTAACTGCAACTTCTGTTTTCA 95042 Query 162596 TCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAG 162655 | || || || || || || |||||||| || |||||||||||| | || ||||| | | Sbjct 95041 TTATCGCTTTTATCGCTGCTCCTCCAGTGGACATCGATGGTATCCGTGAGCCTGTATCTG 94982 Query 162656 GTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTA 162715 |||| ||||| || || ||||||||||||||||||||||| || || | ||| || || | Sbjct 94981 GTTCTCTTCTTTACGGAAACAACATCATCTCTGGTGCTGTTGTACCAACTTCTAACGCGA 94922 Query 162716 TTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATG 162775 | ||||| |||||||| || || |||||||| || |||||||||| ||| | || || | Sbjct 94921 TCGGTCTACACTTCTACCCAATTTGGGAAGCTGCTTCTCTTGATGAATGGCTTTACAACG 94862 Query 162776 GTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTC 162835 |||| |||| |||||| | || | ||||||| | | |||||| ||||| |||| Sbjct 94861 GTGGTCCTTACCAACTAATCGTTTGCCACTTCTTCCTTGGAATCTGCTCATACATGGGTC 94802 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || | ||||||||||||| ||| ||||||||||||||||||||| ||| || ||||||| Sbjct 94801 GTGAATGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTG 94742 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 ||||||| | || || ||||| ||| | |||| || |||||||||||||||||| Sbjct 94741 CACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCT 94682 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 | || | |||||||||||||| |||||||| || |||| |||| |||| |||||||| | Sbjct 94681 CAGATGGTATGCCTCTTGGTATCTCTGGTACATTCAACTTCATGATCGTATTCCAAGCTG 94622 Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075 ||||||||||||| |||||||| ||||| ||| | || || || ||||| |||||||||| Sbjct 94621 AGCACAACATCCTTATGCACCCATTCCACATGCTAGGTGTTGCTGGTGTTTTCGGTGGTT 94562 Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135 || | || ||||||||||||||| || |||||||| ||||| ||| | |||||||||| Sbjct 94561 CATTGTTCTCTGCTATGCACGGTTCACTAGTTACTTCATCTCTAATCCGTGAAACTACTG 94502 Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195 || | || ||| ||| ||||| |||||||| || |||||||| ||||||||||||| Sbjct 94501 AGAACGAATCAGCTAACGCTGGTTACAAGTTCGGTCAGGAAGAAGAAACTTACAACATTG 94442 Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255 | |||||||| || ||||||||||| | |||||||| || || |||||||||||||| | Sbjct 94441 TAGCTGCTCACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTC 94382 Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315 |||| |||||||||||||| ||||| | || || || | || ||||| ||||| | | Sbjct 94381 GTTCTCTTCACTTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGGTTTACTGCTCTTG 94322 Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACG 163375 || | || ||||||||||||||||| ||||| ||||||||||||||||| || ||||| Sbjct 94321 GTATTTCTACTATGGCATTCAACCTAAACGGATTCAACTTCAACCAATCAGTAGTTGATT 94262 Query 163376 CAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435 || || || || ||||||| ||||| | ||| | || |||||||||| Sbjct 94261 CACAAGGACGTGTTATCAACACTTGGGGTGATATTATCAACCGTGCTAACCTTGGTATGG 94202 Query 163436 AAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 163481 ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 94201 AAGTTATGCACGAGCGTAACGCTCACAACTTCCCACTTGACCTTGC 94156 >seq60 Length=599436 Score = 672 bits (744), Expect = 0.0 Identities = 766/1025 (75%), Gaps = 15/1025 (1%) Strand=Plus/Minus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| ||||| | || | |||||||| ||| || ||||||||| || | |||| Sbjct 100573 TGAAAATCGTTTATACATTGGTTGGTTTGGTTGTTTAATGATCCCTACGTTATTAACAGC 100514 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 ||| |||| | |||||| || || || ||||| || || || ||||| ||||||||| | Sbjct 100513 AGCTTCTTGTTACATCATCGCTTTTATCGCAGCTCCGCCTGTAGATATTGATGGTATCCG 100454 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 || ||||| || || || | | || ||||||||||||||| ||||||||| | || Sbjct 100453 TGAGCCTGTAGCTGGATCTTTATTATACGGTAACAACATCATCAGTGGTGCTGTTATACC 100394 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 ||||||||| || || ||| |||||||||| || || |||||||| || | |||| || Sbjct 100393 TAGTTCAAACGCAATCGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCAATTGAAGA 100334 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 |||||| || || ||||| |||| |||| | | || ||||| ||| | || || | Sbjct 100333 GTGGTTATACAACGGTGGTCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGTT-- 100276 Query 162822 AGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGAT 162878 || | || |||||| | ||||||||| ||||| |||||||||||||||||||| Sbjct 100275 -GCTTGTTGGATGGGTCGTGAATGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGAT 100217 Query 162879 CTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTT 162938 | || |||| |||||| |||||| | ||||||| || || ||||| || || ||| | Sbjct 100216 TTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCATCTGCAGTATTCTTAGTTTACCCTAT 100157 Query 162939 CGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACAT 162998 |||||||||| ||||||||| | ||||| | |||||||||||||| ||||||| ||| Sbjct 100156 CGGTCAAGGTAGTTTCTCTGATGGTATGCCATTAGGTATTTCTGGTACGTTTAACTTCAT 100097 Query 162999 GTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGC 163058 | |||| |||||||| || || ||||| |||||||||| ||||||||| ||| || || Sbjct 100096 GATCGTTTTCCAAGCTGAACATAACATTTTAATGCACCCATTCCATATGGCTGGTGTTGC 100037 Query 163059 AGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCT 163118 ||||| |||||||||||| | || |||||||||||||| ||| | || ||||| | | Sbjct 100036 TGGTGTTTTCGGTGGTTCATTATTCAGTGCTATGCACGGATCTTTAGTAACTTCAAGTTT 99977 Query 163119 TATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGA 163178 || | ||||| | || || || ||||||||||| || |||||||||||||| Sbjct 99976 AATTCGTGAAACAAGCGAAGTTGAATCTGTTAACTACGGTTACAAATTCGGACAAGAAGA 99917 Query 163179 AGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGC 163238 ||| ||||||||||| || ||||||||||| ||||||||||| || || ||||| ||||| Sbjct 99916 AGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGTCGTTTAATTTTCCAATATGC 99857 Query 163239 ATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCAT 163298 |||||||||||| | | | || ||||||||||| |||| ||||| || | || Sbjct 99856 TAGTTTCAACAACTCTAGAGCTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTGGGAT 99797 Query 163299 CTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAA 163358 ||||| || || | ||||| ||||||||||||||| | |||||||| |||||||| Sbjct 99796 TTGGTTAACAGCTTTAGGTGTAAGTACTATGGCATTCAACTTAAACGGTTTTAACTTCAA 99737 Query 163359 CCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAA 163415 |||||| || ||||| | |||| || || || || ||||| || ||| |||| Sbjct 99736 CCAATCTGTTGTTGATAGTGAAGGTCGT---GTTATAAACACATGGGCTGACATCATTAA 99680 Query 163416 CAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 163475 | | |||| | ||||||||||| |||||||| ||||| ||||| ||||||||| | || Sbjct 99679 CCGTGCAGATTTAGGTATGGAAGTAATGCACGAACGTAACGCTCATAACTTCCCATTAGA 99620 Query 163476 CCTTGCTGCTGCTGAGACATCTCAGGTTGCTCTAACTGCACCTTCAATT---GGTTAATA 163532 | || || |||| | | ||||| | |||||||||| ||| ||||||| Sbjct 99619 TTTAGCATCTAACGAGATTTTACCTGTTGCGATTTCTGCACCTTCTATTGTAGGTTAATT 99560 Query 163533 AATAG 163537 || || Sbjct 99559 AACAG 99555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553079739274080