Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq493 223 8e-54 >seq493 Length=52014 Score = 223 bits (246), Expect = 8e-54 Identities = 475/711 (67%), Gaps = 9/711 (1%) Strand=Plus/Plus Query 25204 ATTGGTCCGCATGACCACACTGTATATATCGGCCCACACGGCCACGTCGTTATTGTGGAC 25263 || ||| | |||| ||| || | ||| || ||||||| ||| | | | || || Sbjct 37578 ATCGGTGCTCATGCCCATTCTTTCAGTATTGGTTCACACGGACACACCATCACCGTTAAC 37637 Query 25264 GCAGACGGTAATGAGGAAACAACGGTTAAAAACATTGCATTTAATTACATAGTGAGGCTT 25323 || | ||||| | ||||| || || ||||||||||||||||| || || ||||||||| Sbjct 37638 GCTGCGGGTAACGCGGAAAACACCGTCAAAAACATTGCATTTAACTATATTGTGAGGCTT 37697 Query 25324 GCATAATGACTTTTAAAATGAGCAGCAAAGCGCGGACAATTACGATTTATAACCTGCGTT 25383 |||||||| | || | |||||| || | ||||| || | |||||||| |||| Sbjct 37698 GCATAATGGCATTCAGAATGAGTGAACAACCACGGACCATAAAAATTTATAATCTGCTGG 37757 Query 25384 CAGATACGAATGAATTTATTGGGGCAGGTGATGCGTATATACCGCCACACACGGGATTAC 25443 | | || |||||||||||||| | |||||| || ||||| ||||| || || || | | Sbjct 37758 CCGGAACTAATGAATTTATTGGTGAAGGTGACGCATATATTCCGCCTCATACCGGTCTGC 37817 Query 25444 CGGCAAACTGTACGGATATTGCACCCCCTGATATTCCCGCCAGTCATATTGCTGTATTTG 25503 | |||||| |||| ||||||||||| || |||||||| || | | | ||||| || Sbjct 37818 CTGCAAACAGTACCGATATTGCACCGCCAGATATTCCGGCTGGCTTTGTGGCTGTTTTCA 37877 Query 25504 ACGCTGAAACCGAAATGTGGAGTCTGCATGAGGACCACCGTGGCGAGACGGTTTACGACA 25563 || ||| | | |||| ||| ||| ||||| || || | || || || ||| Sbjct 37878 ACAGTGATGAGGCATCGTGGCATCTCGTTGAAGACCATCGGGGTAAAACCGTCTATGACG 37937 Query 25564 CAACAACCGGCAATCAGGTTTATATCTCCTCTCCCGGTCCGCTACCTGAAAACGTCACAT 25623 | ||||| | | | | ||| || | ||||||| |||| ||||| | || | Sbjct 37938 TGGCTTCCGGCGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATTTTACCT 37997 Query 25624 CAGTTTCACCTGATGGTGAATATCAGAAATGGAATGGTAAGGCGTGGGTAAAAGACGAAG 25683 | || || | || ||||||||||| ||||| || | || ||||| || || | Sbjct 37998 GGTTATCGCCGGGAGGGGAATATCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGG 38057 Query 25684 TGGCTGAAACAGCGGCCAGACTTCGTGAAGCTGAAGGAACCAAAAGCCGTCTTTTGCAAA 25743 || |||| | | | | | || || || |||| ||| |||| | || |||| Sbjct 38058 AAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAAAAGCCTGATGCAGG 38117 Query 25744 CAGCAGCGGAGAAAATCGCGCCATTACAGGATGCTGTTGATCTTGAAATCGCAACAGATG 25803 ||| ||| | || ||||| | |||||||||| ||||| ||||| ||||| | | Sbjct 38118 TAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGAAGG 38177 Query 25804 ATGAGAAAGTGCAGCTCGACGAGTGGAAAAAATACAGGGTGTTGGTAAACCGGGTAGATA 25863 | || | | ||| || | ||||| || || |||||||| | ||||| || |||| Sbjct 38178 AAGAAACCTCGTTGCTGGAAGCCTGGAAGAAGTATCGGGTGTTGCTGAACCGTGTTGATA 38237 Query 25864 CCACAA---------ATCCTGACTGGCCTGATGTACCTGTAAGCCAGTAAT 25905 | ||| || ||| ||||||| ||| ||||| | |||||| Sbjct 38238 CATCAACTGCACCTGATATTGAGTGGCCTGCTGTCCCTGTTATGGAGTAAT 38288 Score = 165 bits (182), Expect = 2e-36 Identities = 196/266 (74%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 24796 CCGTGGCCGTCTGACACCATCCCTGCTGGTTACGCCCTGATGCAGGGGCAAGCATTTGAT 24855 |||||||| || || | | | || |||| |||| ||||||||||||||| || ||||| Sbjct 32853 CCGTGGCCATCAGATATCGTTCCGTCTGGCTACGTCCTGATGCAGGGGCAGGCGTTTGAC 32912 Query 24856 AAGAACGTTTATCCCTTACTGGCAATAGCATATCCATCCGGCACTATTCCGGACATGCGC 24915 || | || || ||| || | || |||||||| || |||| || ||||| Sbjct 32913 AAATCAGCCTACCCAAAACTTGCTGTCGCGTATCCATCGGGTGTGCTTCCTGATATGCGA 32972 Query 24916 GGCTGGACAATCAAAGGCAAGCCCGCGAGCGGGCGCGCTGTGCTATCTCAGGAGCTGGAT 24975 |||||||||||||| || || ||||| ||||| || ||||| | |||||||| | |||| Sbjct 32973 GGCTGGACAATCAAGGGGAAACCCGCCAGCGGTCGTGCTGTATTGTCTCAGGAACAGGAT 33032 Query 24976 GGCAACAAATCGCACAGTCACAGCGCCAGAGCGCAGGATACCGATCTGGGAACGAAAGGT 25035 || | || ||||||| ||||| ||||| || | ||| ||| |||| |||||| Sbjct 33033 GGAATTAAGTCGCACACCCACAGTGCCAGTGCATCCGGTACGGATTTGGGGACGAAAACC 33092 Query 25036 ACGTCGTCATTTGATTACGGAACGAA 25061 || ||||| ||||||||||| ||||| Sbjct 33093 ACATCGTCGTTTGATTACGGGACGAA 33118 Score = 165 bits (182), Expect = 2e-36 Identities = 196/266 (74%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 24796 CCGTGGCCGTCTGACACCATCCCTGCTGGTTACGCCCTGATGCAGGGGCAAGCATTTGAT 24855 |||||||| || || | | | || |||| |||| ||||||||||||||| || ||||| Sbjct 36987 CCGTGGCCATCAGATATCGTTCCGTCTGGCTACGTCCTGATGCAGGGGCAGGCGTTTGAC 37046 Query 24856 AAGAACGTTTATCCCTTACTGGCAATAGCATATCCATCCGGCACTATTCCGGACATGCGC 24915 || | || || ||| || | || |||||||| || |||| || ||||| Sbjct 37047 AAATCAGCCTACCCAAAACTTGCTGTCGCGTATCCATCGGGTGTGCTTCCTGATATGCGA 37106 Query 24916 GGCTGGACAATCAAAGGCAAGCCCGCGAGCGGGCGCGCTGTGCTATCTCAGGAGCTGGAT 24975 |||||||||||||| || || ||||| ||||| || ||||| | |||||||| | |||| Sbjct 37107 GGCTGGACAATCAAGGGGAAACCCGCCAGCGGTCGTGCTGTATTGTCTCAGGAACAGGAT 37166 Query 24976 GGCAACAAATCGCACAGTCACAGCGCCAGAGCGCAGGATACCGATCTGGGAACGAAAGGT 25035 || | || ||||||| ||||| ||||| || | ||| ||| |||| |||||| Sbjct 37167 GGAATTAAGTCGCACACCCACAGTGCCAGTGCATCCGGTACGGATTTGGGGACGAAAACC 37226 Query 25036 ACGTCGTCATTTGATTACGGAACGAA 25061 || ||||| ||||||||||| ||||| Sbjct 37227 ACATCGTCGTTTGATTACGGGACGAA 37252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109051852058536