Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 185 2e-41 seq115 152 1e-31 seq281 104 4e-17 >seq1 Length=7344524 Score = 185 bits (204), Expect = 2e-41 Identities = 542/823 (66%), Gaps = 23/823 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| ||||| | || || |||||||| || || || ||||| ||||| || Sbjct 2684357 CTGGTAGTCGCCCACGCGCTTTTCGAAGAAGTTGGTTTTACCTTCCAAAGAGATCAGGTC 2684298 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCC-CATCTGTTCCAGCA 47957 ||| | |||| ||||| | ||| | | | | || || || | | |||||| Sbjct 2684297 CATCCATGGGAATGGGTTCTCTACGTTGAAGATCT-TATCGTGCTTCAGCGCTACCAGCA 2684239 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || || |||||||||| | |||| ||| | ||||| || || || Sbjct 2684238 GGCGGTCGGCTACAAACTCGATGTACTGGCACATCAGGTCGGCATTCATACCAATCAGTC 2684179 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||||| | || | || | ||| ||||| || || | ||||| | | | ||| Sbjct 2684178 CTACGGGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTACGGCATTGGCAATAATA- 2684120 Query 48078 GCTTAACGCGGGACTCTGAGGGT---TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 | | | | | | ||| ||| |||| | | ||| | || |||| |||| Sbjct 2684119 -CCTCTCACCGTA-TCTTTTGGTAGCTTGTGGATGATGTGATCATTGTACAGCAAACAGG 2684062 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | ||||| || || || |||||||| | | | || ||||||| ||||| | Sbjct 2684061 CAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGAAGCTCAGACCCG 2684002 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || || | |||||| || | ||| || ||||| |||||||| | Sbjct 2684001 GCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAGAAAAGAAGATAC 2683942 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||||||||| || || ||| |||| | ||| |||| ||| | |||| |||| Sbjct 2683941 CCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAACCATTCT------CAATCC 2683888 Query 48315 -AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 | | ||| ||||| || || || ||||| | ||| || ||||| ||||| ||| Sbjct 2683887 AACGCAAG-GCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGGCGTTGAAC 2683829 Query 48374 AGCT--TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 || | |||| || || ||| || |||||| || ||| | ||| ||| Sbjct 2683828 AGGTAGTCTT--TTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGTAAGTCT 2683771 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | |||||| || |||||| || ||||||||| ||||||| || Sbjct 2683770 CCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCGTATACT 2683711 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | || || | || ||||| ||| ||||| || || ||||| || || || |||| Sbjct 2683710 GTACCTCGGCTACAAAGTTCTCCGCCAGGTTCTCGTTTACGATCCCGTCAGAGGCCGCAA 2683651 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG--AGC-ATTCCAGC 48608 | ||||| || |||||||| | ||| || ||||| | || | | || || |||||| Sbjct 2683650 AAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATCGTCGTTTAGTTTGCTATTCCAAT 2683591 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAA 48651 | | ||||| || |||||| | || ||| |||||||||| Sbjct 2683590 CGGTCAGGTCTTGGCTCAGGTCAATCTCCTCCGCAGTCCAGAA 2683548 Score = 113 bits (124), Expect = 8e-20 Identities = 445/698 (64%), Gaps = 34/698 (5%) Strand=Plus/Minus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||||| | |||||||| ||||| ||||| | || || || ||||| Sbjct 2686350 GTGTATGGCTCGAAACATTCGTTGTTGCCCAGGATCTGAGAGGTAGAAGCAGTTGGCATT 2686291 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCC 213080 || || ||||| | ||||| | || || | || ||| | ||||| ||| Sbjct 2686290 GGCGCTACCAGCAAGCTGTTGCGCAGGCCATTCTTCTTAATGTCCTTCTTCAGCTCGGCC 2686231 Query 213081 CAGTCCCATCTGCCAGACAGGTCCTCGTC-CTTCACGTTCCACATGTCAAACTGCAAGAT 213139 || ||||| | || | | | | |||| |||||| ||| |||||| | Sbjct 2686230 CAATCCCAAC----------GTTCGCTTGGCGTCACACCCCACATATCATACTGCAGTAC 2686181 Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 || | ||| | || ||||| ||| ||| | || ||||| |||||||| | Sbjct 2686180 ACCCTCGCTGGCTGGTGAGCCCTTATAACTCTCGTAAGTACCTTGCTCTTTGGCCAGGGC 2686121 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTT 213259 ||| || |||||| || ||||||||||| ||||| || || |||| | | Sbjct 2686120 ACAGCTTTCCGTCAGGGCCGCATAGTAGATGGTCTCAAAAATGTCTTTGTTCAATTGGCG 2686061 Query 213260 GGCCTCTGGGG------ACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCC 213313 ||||| | | | | || |||||| ||| || |||| |||| || Sbjct 2686060 TGCCTCCTCGCTATCAAATGGGTAGCGCATCAAAATG------AAGGCATCCGCCAAACC 2686007 Query 213314 CTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGG 213372 ||| || || | ||||| || | || | || ||| ||| | || |||||| | | Sbjct 2686006 CTGTACACCCAAACCGATTGGGCGATGACGCATATTACTATTGCGTGC-CTCCTCAATAG 2685948 Query 213373 GGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGG 213432 |||| ||||| ||||| | |||||| ||||||||||| | | ||| || | | Sbjct 2685947 GGTAGTAGTTGATATCGATAACCTTGTTCAGGTTGCGGGTCACGATACGGGTTACTTCGT 2685888 Query 213433 CCAGGTACTCGTGATTGAACACGTA---GCCCCCGTCCTGCACAAACTCAGGCAGGGCGA 213489 |||| ||| || |||| ||| | || | || | | | ||| || | Sbjct 2685887 ACAGGCGCTCA------AAGTCGTAAGTGCCGTCTTCTTTTACGTATTTACCCAGTGCCA 2685834 Query 213490 TGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGC 213549 || || ||||| || || || || || | || | |||||||| ||||||||||| | Sbjct 2685833 AACTCGCGAGGTTACATACCGCTACTTCATCAGGTGCAGTGTACTCGATGATCTCGGTAC 2685774 Query 213550 ACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAAT 213609 | ||||| || |||||||| ||||||||||| ||||| ||| |||||| | || Sbjct 2685773 AAAGGTTTGAGCTGCGGATGGTACCCAGGTTCTGCTGGTTGCTCTTGCGGTTGGCCGCAT 2685714 Query 213610 CCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 ||||||| || || || || | ||||| || | |||| Sbjct 2685713 CCTTGTAAAGGATATACGGTGTACCGGTTTCGATCTGG 2685676 >seq115 Length=378902 Score = 152 bits (168), Expect = 1e-31 Identities = 252/363 (69%), Gaps = 18/363 (5%) Strand=Plus/Minus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| || ||||| |||||| ||| ||||| |||||||||||| |||| |||||||| || Sbjct 238465 GCAAGCGAAGTCGGTGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTCGAGAAGCACAG 238406 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 || ||||| | || | || |||||||||||| | || ||| ||| |||||||| Sbjct 238405 GCCGGGCATCAGGCCGCGCTTTTTGAGCCAGAAGACGGCGCAGAAGCTGCCGGAGAAGAA 238346 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 |||||||||||| ||||||||||| ||||| ||| |||| || || | ||| | Sbjct 238345 GATGCCCTCCACGGCCGCGAACGCAACGAGCCGCTCCGCGAAGGACGC---CAGGTCCGG 238289 Query 48310 GAT---CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 | | ||| |||||||| |||||| | | ||| |||| ||||| ||||| Sbjct 238288 GTTGCACCACCGCAGCGCCCACCTCGCCTTCCTTCGCACGCAAGGCACGGTCTCCATGGC 238229 Query 48367 CCGGAAGAG------CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTT 48420 ||| || ||||| | || |||||| || ||||| || |||| Sbjct 238228 GTTGAACAGGTGGGCCTTCTCGGAC------GCGTCCTTGACGTAGGTGTCGATCAGCAG 238175 Query 48421 TGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGC 48480 ||||| ||| ||| | ||||| || ||||||||||| ||||||||| || || Sbjct 238174 ACTGTACACCTCGCTGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCACCGCGC 238115 Query 48481 CTC 48483 ||| Sbjct 238114 CTC 238112 >seq281 Length=162485 Score = 104 bits (114), Expect = 4e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 213470 CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGT 213529 ||| |||| ||||| | | |||| | |||||||| || ||||||||| | |||||| Sbjct 76795 CACGAACTTGGGCAGCACCACGCTGCCGAGGTTGCACACCGCCACCTCCCCGGGGTCTGT 76854 Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||||| |||||||||||| || ||| | | |||| |||||||||| ||||||||| Sbjct 76855 GTACTCCACGATCTCGGTGCAGAGATTGGAGGACTGGATAGTGCCCAGGTGCTGGTGGTT 76914 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/134 (76%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 213713 CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGAC 213771 |||||| | |||||||||| | ||| || | |||||| || | | || ||||| | Sbjct 78003 CTCGTATCGAGCGTAGAGCTCCTCGAACTCCTTCCCCCAGCACTCCGAG-AGACCCGGGC 78061 Query 213772 AGGATGCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGG 213830 | || ||||||||||||||||| |||||||| | ||| || | || |||||||||| Sbjct 78062 ACTGAGCAGGACACATGAGGCTCCACTCCCCGTCCTGCTC-CACCCGCTCCATGAACAGG 78120 Query 213831 TCCGGGACCCACAG 213844 ||||||| |||||| Sbjct 78121 TCCGGGATCCACAG 78134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524276474880