Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq115 141 2e-28 seq10 102 2e-16 seq223 91.5 3e-13 seq9 89.7 1e-12 seq337 84.2 4e-11 >seq115 Length=378902 Score = 141 bits (156), Expect = 2e-28 Identities = 254/365 (70%), Gaps = 12/365 (3%) Strand=Plus/Plus Query 25678 GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTAT 25737 ||||| ||| |||||||| |||||||| |||||||| || | ||| |||||||| Sbjct 238112 GAGGCGCGGTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGGTGTA- 238170 Query 25738 GCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGT 25794 || || ||||| || ||| | | |||| |||||| | | ||||| Sbjct 238171 --CAGTCTGCTGATCGACACCTACGTCAAGGACGCGTCCGAGAAGGCCCACCTGTTCAAC 238228 Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 ||||| ||| | | || || | ||||||||| ||||||| || |||| |||| Sbjct 238229 GCCATGGAGACCGTGCCTTGCGTGCGAAGGAAGGCGAGGTGGGCGCTGCGGTGGTGCAAC 238288 Query 25855 AGCCAGAGC--GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCT 25912 || || | || | || | |||||||| || || || || || ||||||||||||| Sbjct 238289 --CCGGACCTGGCGTCCTTCGCGGAGCGGCTCGTTGCGTTCGCGGCCGTGGAGGGCATCT 238346 Query 25913 TTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGG 25971 | ||| ||| | | ||| ||| ||||||||||||| || || |||||||| Sbjct 238347 TCTTCTCCGGCAGCTTCTGC-GCCGTCTTCTGGCTCAAAAAGCGCGGCCTGATGCCCGGC 238405 Query 25972 CTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGC 26031 |||| ||| || ||||||||||||||| | |||||||| || |||| || || || ||| Sbjct 238406 CTGTGCTTCTCGAACGAGCTCATCAGCCGCGACGAGGGCCTGCACACCGACTTCGCTTGC 238465 Query 26032 CTGCT 26036 || || Sbjct 238466 CTACT 238470 >seq10 Length=1322232 Score = 102 bits (112), Expect = 2e-16 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 221167 AGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCAT 221226 |||||| || |||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 362683 AGTGAAGGGCTCGACGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCGGTGGGCAT 362624 Query 221227 GGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 || |||| || ||| |||||| || ||| Sbjct 362623 AGGCGCCAGGAGAAGAGAGTTGCGTAGACCG 362593 >seq223 Length=213198 Score = 91.5 bits (100), Expect = 3e-13 Identities = 454/712 (64%), Gaps = 22/712 (3%) Strand=Plus/Minus Query 221747 GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGA 221806 || ||||| |||||||| | ||||||||| || |||||| | || ||||| ||| Sbjct 55880 GTGTACTGAATGATCTCGGCGCAGAGGTTGGAGCTCTTGATAGCTCCGAGGTGGCCGTGG 55821 Query 221807 TTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGA 221866 || ||||||| || ||||||||| | | ||| | || ||| ||||||| ||| Sbjct 55820 TTGCTGGTGCGATTAGCCGCGTCCTTGAACAAGATATACGGCGTGCCTGTCTCCACCTGC 55761 Query 221867 GCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGT-CCTCTTGACTGCACCCTC 221925 | | | || | || ||| || | |||||| | || ||||| ||| | || Sbjct 55760 ACGTCTATGATGTGGTTCCACAGCTGCCTGGCGGAGA--GTACCTCT---CTGGCCTTTC 55706 Query 221926 GGTCTTT-TCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGC 221984 |||| || ||| ||| || || || || || || | | ||| ||||| Sbjct 55705 CCTCTTCCTCGTACTTGGTGTATAGATCTTCGAATGCCTCGCCATGGACGTCGGACAGGC 55646 Query 221985 CTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGA 222044 | | | | ||| | | ||| ||| || |||| || ||||||| ||||| Sbjct 55645 CCGTTGCCTCGTTGGGTGAGAACAGCGCCCACTGTCCGTTGGATTCCACCCTCTTCATGA 55586 Query 222045 AGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGT 222104 | | |||||| | ||||||||| ||||| || |||| |||| | || ||| Sbjct 55585 ACAAGTCCGGCACCCACAGCGCAAAGAAGAGGTCCCTGGCTCGCTCCAAGTCGTTGCCCG 55526 Query 222105 TGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGG 222164 ||||||| ||| ||||| ||| | ||||| ||||||||||||||||| |||| || Sbjct 55525 TGTTTTTTTTCATGTCCAAGAACGCGCGTATGTCGGCGTGCCACGGCTCCAGGTAGAAGG 55466 Query 222165 CCAGAGCGCCGGGTCGCTTGTTGCCACCC---TGATCCACCATCCTC-TCCAGAGCGTTG 222220 | | || | | ||| ||| ||| || || | | | | ||| ||||| Sbjct 55465 C--AAACGAC----CCCTTCCTGCGCCCCGCTTGGTCGATGAAGCGCGAGCAG-TCGTTG 55413 Query 222221 AAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCA 222280 || || || || |||| || | ||| | || ||| || || | ||||||| Sbjct 55412 AACATCCGCAGCATCGGCACGATGCCGCTAGACTTTCCGCCCGTTCCTCTGATGTACGAG 55353 Query 222281 CCGCCGGCCCTC--AGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCA 222338 ||| | ||| | | || | | || ||||||||| || |||| || || || Sbjct 55352 CCG--GTCCCGCGTATGTCGTGGATACTCACGCCGATACCCCCCGCGTACTTGGATATGT 55295 Query 222339 TGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCA 222398 || ||| ||| |||||||| | || ||||||| || || ||| | || || | Sbjct 55294 GCGCACAGTCCTTTAGAGTGTCGAAAATCCCCTCCACGGAATCGCTCTTCATGTGGAGGA 55235 Query 222399 GAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGG 222450 | || |||||||||||||| | | | || | |||||| ||||| || || Sbjct 55234 GGAAGCAAGACGACATCTGCGCGTGCGGGGTGCCGGCGTTGAACAGAGTCGG 55183 >seq9 Length=1386778 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 25904 AGGGCATCTTTTTCA-GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC 25962 ||||||| || ||| | || | | |||| ||||||||||||||||| || ||| Sbjct 883807 AGGGCATTTTCTTCTCGGGGAGCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGTCTG 883865 Query 25963 ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGAT 26022 |||||||||||| ||||| |||||| | |||||| | || ||||| || ||| | || Sbjct 883866 ATGCCCGGGCTGACGTTTTCGAACGAGATGATCAGCCGCGATGAGGGCCTGCACTGCGAC 883925 Query 26023 TTTGCCTGCCTGCTCT 26038 || ||||||| ||||| Sbjct 883926 TTCGCCTGCCAGCTCT 883941 >seq337 Length=117279 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 ||||||||||||||| |||||||||| || | |||||||| || | |||| ||| Sbjct 21461 CTGCATGAAGAGGTCGGGGATCCACATGGCGTAGAAGAGATCCCTCGCGCGCTCGAGCTC 21402 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 ||||| ||| ||| | || ||||| || | | | ||| |||||||| |||||||| Sbjct 21401 GTTGCCGTGGTTCTTCTTGAGGTCCAAGAAGGCCACCACGTCCGCGTGCCATGGCTCCAG 21342 Query 222157 ATAGACGGC 222165 || ||||| Sbjct 21341 GTACACGGC 21333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928836301070080