Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq493 129 1e-25 >seq493 Length=52014 Score = 129 bits (142), Expect = 1e-25 Identities = 73/74 (99%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 204 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGT 263 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 47254 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGT 47313 Query 264 GCGAGGATTGTTAT 277 |||||||||||||| Sbjct 47314 GCGAGGATTGTTAT 47327 Score = 129 bits (142), Expect = 1e-25 Identities = 73/74 (99%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 204 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGT 263 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 50034 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGT 50093 Query 264 GCGAGGATTGTTAT 277 |||||||||||||| Sbjct 50094 GCGAGGATTGTTAT 50107 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 39485 aaaaaaCCGCCATCAGGCGGCTTGGTGTTCTTTCATTTCTTCAATTCGAATATTGGTTAC 39544 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 47072 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 47131 Query 39545 GTCT 39548 |||| Sbjct 47132 GTCT 47135 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 39485 aaaaaaCCGCCATCAGGCGGCTTGGTGTTCTTTCATTTCTTCAATTCGAATATTGGTTAC 39544 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 49852 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 49911 Query 39545 GTCT 39548 |||| Sbjct 49912 GTCT 49915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126744498263872