Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019507.1 Length=182833 Score E Sequences producing significant alignments: (Bits) Value seq1 105 8e-18 seq2 89.7 6e-13 seq6 84.2 3e-11 >seq1 Length=7344524 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 167468 GTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACCAG 167527 ||||||||| ||||||||||||| ||||||| || ||||||| || ||||||||||| | Sbjct 7232152 GTCGGGGTGGCAGGATTCGAACCTGCGGCCCCCTGCTCCCAAAGCAGGTGCGCTAACCGG 7232211 Query 167528 ACTGCGCTACACCCCGAA 167545 |||||||||||||||||| Sbjct 7232212 ACTGCGCTACACCCCGAA 7232229 >seq2 Length=6328565 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 167464 AATGGTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAA 167523 ||||||||| |||| ||||||||||||| || |||| | ||||| ||| | ||||||| | Sbjct 1778112 AATGGTCGGAGTGAGAGGATTCGAACCTCCGACCCCCTCGTCCCGAACGAGGTGCGCT-A 1778170 Query 167524 CCAGACTGCGCTACACCCCGA 167544 |||| ||||||||||| |||| Sbjct 1778171 CCAGGCTGCGCTACACTCCGA 1778191 >seq6 Length=3173221 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 167464 AATGGTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAA 167523 ||||||||| ||| ||||||||||||| || |||||| ||||| ||| ||||||||| | Sbjct 464884 AATGGTCGGCGTGGCAGGATTCGAACCTGCGACCCCTTCGTCCCGAACGAAGTGCGCT-A 464826 Query 167524 CCAGACTGCGCTACACCCCGA 167544 ||| |||||| |||| |||| Sbjct 464825 CCAAGCTGCGCCACACGCCGA 464805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584932247820960