Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq60 111 3e-19 >seq60 Length=599436 Score = 111 bits (122), Expect = 3e-19 Identities = 179/250 (72%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 48489 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTT 48548 |||||||||||||| | |||||||| ||||||||| | || | ||| || ||||| | Sbjct 111811 GCTGGTACAAAATATAGAGGTGAATTTGAAGAACGTTTAAAACGAATTGTTCAAGAATTA 111752 Query 48549 AAAAAACGAGAAAATGTAATT-TTGTTCATTGATGAAGTACATATTATGATGGGTGCTGG 48607 ||| ||| | ||||| ||||| ||||| |||||||| || |||| | | |||||||| Sbjct 111751 AAAGAACAAAAAAATATAATTATTGTT-ATTGATGAGGTTCATACATTAGTTGGTGCTGG 111693 Query 48608 TGGTAGCAGCACTGGATCTATGGATATGAGC-AATATCATGAAACCTGCACTTTCACGTG 48666 || | || | | ||| | | ||| ||| || || | |||||||| | |||||| Sbjct 111692 TGCT-GCTGAA--GGAGCATTAGAT-GCAGCAAACATATTAAAACCTGCTTTGGCACGTG 111637 Query 48667 GTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAAG 48726 | || | | ||| || |||||||| || |||||| | || | |||||||||| Sbjct 111636 GAGAATTACAATGTATTGGAGCAACAACAATCGATGAATATAGACAACATATTGAAAAAG 111577 Query 48727 ATGCTGCATT 48736 || |||| || Sbjct 111576 ATCCTGCTTT 111567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106447222810784