Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq19 91.5 2e-13 seq3 84.2 3e-11 seq2 84.2 3e-11 >seq19 Length=1029424 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 198942 TAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAGTCCAGTA 199001 ||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| Sbjct 39160 TAGCTCAGTTGGTTAGAGCAGGGGACTCATAATCCCTTGGTCGCTGGTTCGAGTCCAGCT 39219 Query 199002 GGGGCCACCA 199011 ||| |||||| Sbjct 39220 GGGCCCACCA 39229 >seq3 Length=4400433 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 198692 GGATGTGGTGAAATTGGCAGACACACTAGATTTAGGTTCTAGCGCC-ATAGGCGTGACGG 198750 |||||||| |||||||| |||| ||| ||||||||||||| ||||| ||||||| || Sbjct 3471666 GGATGTGGCGAAATTGGTAGACGCACCAGATTTAGGTTCTGGCGCCGCGAGGCGTGGGGG 3471725 Query 198751 TTCGAGTCCGTCCATCCCGACCA 198773 ||| ||||| ||||||| |||| Sbjct 3471726 TTCAAGTCCCTCCATCCGCACCA 3471748 >seq2 Length=6328565 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 198692 GGATGTGGTGAAATTGGCAGACACACTAGATTTAGGTTCTAGCGCC-ATAGGCGTGACGG 198750 ||||||||||||||||| |||||| | ||||||||||||| | ||| ||||||| || Sbjct 3326227 GGATGTGGTGAAATTGGTAGACACGCCAGATTTAGGTTCTGGTGCCGCAAGGCGTGGGGG 3326168 Query 198751 TTCGAGTCCGTCCATCCCGACCA 198773 ||| ||||| ||||||| |||| Sbjct 3326167 TTCAAGTCCCTCCATCCGCACCA 3326145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741442815736160