Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq4 158 4e-34 seq3 156 1e-33 seq562 132 2e-26 seq19 109 2e-19 seq2 109 2e-19 seq201 93.3 1e-14 >seq4 Length=3599618 Score = 158 bits (174), Expect = 4e-34 Identities = 460/698 (66%), Gaps = 39/698 (6%) Strand=Plus/Plus Query 45473 GAAAACGGCGTGGAGAAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGT 45532 |||||||| | |||| | ||| || ||||| || |||||| | || || ||||| || Sbjct 201472 GAAAACGGGGAGGAGCGCGGAGACCGCACGGGCACTGGCACACTCTCCGTCTTCGGTCGC 201531 Query 45533 CAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATC 45592 ||| |||| | ||| || ||||| || | | || || || ||| | ||| || Sbjct 201532 CAGGCCCGCTACGATCTGCGTGAGGGATTTCCCTGCCTAACCACAAAGAAGCTTCATCTC 201591 Query 45593 CGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTG 45652 ||||| ||||| | || ||||| ||||| | ||||| || || || | ||| || Sbjct 201592 CGCTCAATCATCCACGAGCTGCTGTGGTTCCTCAAAGGTGACACCAACATCACCTACCTG 201651 Query 45653 CAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCA 45712 |||| || || || || || |||||||| ||||| ||||||||||| || |||||||| Sbjct 201652 AAGGAAAACGGCGTCACCATCTGGGACGAATGGGCGGATGAAAACGGGGACCTCGGCCCC 201711 Query 45713 ATCTACGGCGCG-CAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGG----TCGACC 45767 ||||||| ||| |||||| || |||||| | |||||| ||| |||||| Sbjct 201712 GTCTACGG-GCGTCAATGGAGGAAATGGAAAACCGAGGACGGG----CGGGTCATCGACC 201766 Query 45768 AAATTGCGGCGGTCTTTAAGGAAA---TCAAGCGCAACCCGAACTCGCGGCGGTTGCTTG 45824 |||| ||| || ||| |||| ||| |||||| | || || || | | Sbjct 201767 AAAT--CGG-GGAACTTATCGAAAGCCTCACCTACAACCCCCAATCCCGCCGCCACATCG 201823 Query 45825 TGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCT 45884 | ||| ||||||||||| | || ||||||| | ||||| || ||| | ||| Sbjct 201824 TCTCCGCATGGAACGTGGCCGACGTGCCGGAAATGGCCCTCCCCCCTTGCCAT--CTCCT 201881 Query 45885 TT--CAGTTTTACGTC------GC---GAATGG-------CC--GGTTGTCATGCATGTG 45924 || ||||| |||||| || || || || | | || ||| | Sbjct 201882 TTTCCAGTTCTACGTCCATGAAGCTCAAAACGGGGGCAAACCAGGACTCTCCTGCCAGCT 201941 Query 45925 GCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCT 45984 | ||||| | |||| |||||||| | || || |||||||| ||| || || Sbjct 201942 CTACCAGCGCAGCGCCGATCTTTTTCTAGGCGTTCCCTTCAACATCGCCTCCTACGCTCT 202001 Query 45985 GTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGG 46044 | || ||| |||| || ||| |||| ||| | | || || | |||| Sbjct 202002 CCTCACCCATCTGGTCGCTCAAATCTGCGGTTACGAGCCCCGGGACTTCGTCCACACCTT 202061 Query 46045 CGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGA 46104 |||||| |||| | ||| ||||| ||||| ||||||||||| ||||| || || || Sbjct 202062 CGGCGATCTCCACCTCTACCTCAATCACCTGGATCAAGCGAAACTACAGCTCACCCGGGA 202121 Query 46105 GCCGCGCCCGCTGCCGAAGCTCGTGATCAA-ACGGAAG 46141 ||| ||||| || || ||||| |||||| |||||| Sbjct 202122 GCCCCGCCCCCTCCCCGAGCTCTGGATCAATCCGGAAG 202159 >seq3 Length=4400433 Score = 156 bits (172), Expect = 1e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGAT 45496 ||||| |||||||| |||||| | ||||||| | ||||||||||| || | || Sbjct 1995026 ATGAAGCAATATCTCGACTTGTTAGAAGACATTCTCGAAAACGGCGTAGAACGCGGCGAC 1995085 Query 45497 CGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGAC 45556 || || || |||||||| | ||||| || || || |||| || || || || Sbjct 1995086 CGCACCGGGACAGGCACGCTCGGCGTGTTTGGACGACAAATGCGGTTCGACCTGAGTGAG 1995145 Query 45557 GGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTC 45616 |||| || ||| |||| || || || |||||| | || ||||||||| ||||| | Sbjct 1995146 CGATTTCCACTCCTGACCACTAAGAAATTGCATTTGCGGTCGATCATTGTCGAACTCTTA 1995205 Query 45617 TGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGG 45676 ||||| || |||||||| ||||| |||| |||||||| || | ||||||| Sbjct 1995206 TGGTTCCTACGCGGCGATACAAATGTGCGCTGGTTGCAGGACCGCAAAGTTAAGATTTGG 1995265 Query 45677 GACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCG 45732 ||||||||||| || || || || |||||||| || | |||||| ||||||||| Sbjct 1995266 GACGAGTGGGCTGACGAGAATGGTGATCTCGGGCCGGTTTACGGCAAGCAATGGCG 1995321 >seq562 Length=35438 Score = 132 bits (146), Expect = 2e-26 Identities = 202/285 (71%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGAT 45496 ||| | ||||||| ||| |||| | ||| | || |||| || |||| || Sbjct 12888 ATGCAGCAATATCACGACGCCTTGCAGCATATCCTTGACCACGGGGTCGAGACGACGGAC 12947 Query 45497 CGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAA-CTTGCAGGA 45555 || || || || ||||| |||||| |||||| || | ||||| | | ||||| | | Sbjct 12948 CGCACCGGTACGGGCACCTTGTCGTGTTTCGGCATGCAACAGCGCTATGATCTTGCCG-A 13006 Query 45556 CGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCT 45615 || ||||||||||| || |||||||| |||| | ||||| |||||| | || || || Sbjct 13007 TGGCTTCCCGCTCGTCACCACGAAAAAACTGCACCTGCGCTCCATCATTCACGAGCTTCT 13066 Query 45616 CTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTG 45675 |||||||| |||||||| || | || || | || |||||||| |||| || Sbjct 13067 GTGGTTTTTGTCCGGCGATACCAACATCAAATACCTGAAAGACAATGGTGTTTCGATCTG 13126 Query 45676 GGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGG 45720 |||||||||||| |||||||| ||||| || || || |||| || Sbjct 13127 GGACGAGTGGGCGGATGAAAATGGCGACCTTGGGCCGGTCTATGG 13171 >seq19 Length=1029424 Score = 109 bits (120), Expect = 2e-19 Identities = 187/270 (69%), Gaps = 10/270 (4%) Strand=Plus/Minus Query 45957 TGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACC 46016 ||||||| || || || ||| || ||| | || || ||| |||||||||| ||||||| Sbjct 785109 TGCCGTTCAATATTGCCTCCTACGCTCTGCTCACGCACATGATTGCCCAACAGTGCGACC 785050 Query 46017 TCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGG 46076 | || || || || || | ||| ||||||| || ||||| | || |||||| Sbjct 785049 TGGAGGTTGGAGAGTTCGTGCATACCTTCGGCGACTGTCACCTGTACCAGAACCATCTG- 784991 Query 46077 AACAAGCGAAA----CT----GCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGT 46128 || || | || |||| ||| |||| |||| ||| || |||||| ||| || Sbjct 784990 -ACCGATGACATCGTCTTCGAGCAGTTGAAGCGCAAGCCCCGCGCGTTGCCGACGCTGGT 784932 Query 46129 GATCAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGG 46188 ||||||||| ||||| | ||||| || || || ||||| || || |||| || Sbjct 784931 GATCAAACGCAAGCCCGAGAGCATCTTCGAGTACGAGCTGGAGGACTTCGAGTTTGAGGG 784872 Query 46189 CTATGACCCGCACCCGGCGATTAAGGCTCC 46218 ||||||||||| |||| || ||||| || Sbjct 784871 GTATGACCCGCATCCGGGCATCAAGGCGCC 784842 Score = 109 bits (120), Expect = 2e-19 Identities = 204/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGAT 45496 |||||| ||||| ||| || |||||||| | | || ||||| | || || | ||| Sbjct 785668 ATGAAAGCCTATCTCGACCTGATGCAAGACGTTGTTGATAACGGATTCGACAAGGGAGAC 785609 Query 45497 CGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGAC 45556 || || || ||||| ||||||||||||||| ||| | || || ||| ||||||| Sbjct 785608 CGTACCGGTGTCGGCACCCGGTCGGTGTTCGGCCGCCAGATCCGTTTCAACCTGCAGGAA 785549 Query 45557 GGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTC 45616 || || || || ||||| || || ||| | || | ||| || ||||||||| ||||| Sbjct 785548 GGCTTTCCCCTGGTGACCACCAAGAAGGTCCACCTGCGCAGCATTATTTATGAATTGCTC 785489 Query 45617 TGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGA--GAATGGTGTGACGATTT 45674 |||||| | ||| || | || ||||||| | | ||| | | || | Sbjct 785488 TGGTTTCTCCGGGGCTCCACCGACAACACCTGGCTGCAGGAGCGGAAGGTCT--CCATCT 785431 Query 45675 GGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCG 45732 || |||||||||| || || || || ||||| || || |||||| ||| ||||| Sbjct 785430 GGAACGAGTGGGCACTGGAGAATGGTGACCTCGGGCCCATTTACGGCAAGCAGTGGCG 785373 >seq2 Length=6328565 Score = 109 bits (120), Expect = 2e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45537 TGCGCTTTAA-CTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGC 45595 |||||||| | || || | | || |||||||| || ||||| |||||| |||| | || Sbjct 4241265 TGCGCTTTGATCTCGCCGAAGGG-TTCCCGCTGGTCACGACCAAAAAGCTGCACCTGCGG 4241207 Query 45596 TCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAG 45655 ||||||||| | || ||||||||||| | ||||| || ||| | | ||| | || Sbjct 4241206 TCGATCATTCACGAGCTGCTCTGGTTCCTCGCCGGCGACACCAATATCGGGTATCTCAAG 4241147 Query 45656 GAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATC 45715 || || || || | ||| ||||| || ||||| ||||| || ||||| || || || || Sbjct 4241146 GAAAACGGCGTCAAGATCTGGGATGACTGGGCGGATGAGAAGGGCGAGCTTGGTCCGGTC 4241087 Query 45716 TACGGCGCGCAATGGCGGTCGTGG 45739 ||||| || ||||| || ||| Sbjct 4241086 TACGGATACCAGTGGCGCTCCTGG 4241063 >seq201 Length=246981 Score = 93.3 bits (102), Expect = 1e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45524 TTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAG 45583 |||||| |||| ||||| | | || ||| || ||||| || || || || || || Sbjct 14314 TTCGGCATGCAGCAGCGCTATTCCCTGGCGGATGGCTTCCCCCTGGTCACAACCAAGAAA 14255 Query 45584 TTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTT 45643 |||| | || ||| | | |||||||| ||||| | || |||||||| | Sbjct 14254 CTGCACCTGAAATCCATCGTGCACGAACTGCTGTGGTTCCTCGCCGGGGATACGAACATC 14195 Query 45644 CGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGAT 45703 ||| | |||| || || || |||| |||||||| ||||| || |||||||||||| Sbjct 14194 AAGTATCTCAAGGACAACGGCGTTTCGATCTGGGACGAATGGGCGGACGAAAACGGCGAT 14135 Query 45704 CTCGGCCCAATCTACGGCGCGCAATGGCG 45732 || ||||| | ||||| |||||||||| Sbjct 14134 CTGGGCCCGGTTTACGGGTCGCAATGGCG 14106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157749028754648