Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019706.1 Length=42780 Score E Sequences producing significant alignments: (Bits) Value seq493 412 9e-111 >seq493 Length=52014 Score = 412 bits (456), Expect = 9e-111 Identities = 245/256 (96%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 23926 aaaaaaCCGCCATCAGGCGGTTTTGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 23985 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 47072 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 47131 Query 23986 GTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCGTTGAAGTCCTC 24045 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| Sbjct 47132 GTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCGTAGCAGTCGTTGATGTTCTC 47191 Query 24046 TGCTTCGATAACCCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGAAAGTGCAT 24105 ||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct 47192 CGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCTCCTGTGACTCGGAAGTGCAT 47251 Query 24106 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGA 24165 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 47252 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGA 47311 Query 24166 GTGCGAGGATTGTTAT 24181 |||||||||||||||| Sbjct 47312 GTGCGAGGATTGTTAT 47327 Score = 412 bits (456), Expect = 9e-111 Identities = 245/256 (96%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 23926 aaaaaaCCGCCATCAGGCGGTTTTGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 23985 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 49852 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 49911 Query 23986 GTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCGTTGAAGTCCTC 24045 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| Sbjct 49912 GTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCGTAGCAGTCGTTGATGTTCTC 49971 Query 24046 TGCTTCGATAACCCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGAAAGTGCAT 24105 ||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct 49972 CGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCTCCTGTGACTCGGAAGTGCAT 50031 Query 24106 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGA 24165 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 50032 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGA 50091 Query 24166 GTGCGAGGATTGTTAT 24181 |||||||||||||||| Sbjct 50092 GTGCGAGGATTGTTAT 50107 Score = 260 bits (288), Expect = 4e-65 Identities = 591/877 (67%), Gaps = 24/877 (3%) Strand=Plus/Plus Query 7510 CAACTGAGGATCCACCTGAAGCGATGAACAGACACAGCGCAATTCGTGCAGCCATTCTGG 7569 ||||||||||| | |||||||||| ||| | | | | ||||||||| | |||| Sbjct 15544 CAACTGAGGATGGTAATAAAGCGATGAA---ACATACTGAACTCCGTGCAGCCGTACTGG 15600 Query 7570 CAAAACTGAA-AGCCGAGATCACCGACACGGTCACCTGGTTTGACGGGCGCCCTGTTTTT 7628 |||| | | | || ||||| || || | ||||| || ||||| | | || Sbjct 15601 ATGCACTGGAGAAGCATGA-CACCGGGGCG---ACGTTTTTTGATGGTCGCCCCGCTGTT 15656 Query 7629 CTTGAAGAGCAGGATCTCCCTGCCGTGGCTGTATACCTTTCTGACGCGGAGTACACCGGC 7688 |||| ||| |||| | || || || || || || || | | ||| || ||||| ||| Sbjct 15657 TTTGATGAGGCGGATTTTCCGGCAGTTGCCGTTTATCTCACCGGCGCTGAATACACGGGC 15716 Query 7689 GACTCGCTTGACGAAGATTCGTGGCAGGCGGTTGTTCACATCGAGGTATTTCTTAAAGCC 7748 || ||| ||| ||| | |||||||||| | || ||||| || || || ||| Sbjct 15717 GAAGAGCTGGACAGCGATACCTGGCAGGCGGAGCTGCATATCGAAGTTTTCCT----GCC 15772 Query 7749 TCC--AGC--CCCGACAGCGCGCTTGATTCCTGGATGGAAGAGAAAGTGTATCCGGCAAT 7804 | | || || || | ||| ||| | |||||||| | ||||||| || Sbjct 15773 TGCTCAGGTGCCGGATTCAGAGCTGGATGCGTGGATGGAGTCCCGGATTTATCCGGTGAT 15832 Query 7805 GGCCTTCATCCCGGGTCTGACCGAACTGGTCG--AG-ACGTTCACCCCGCAGGGTTATGA 7861 | | ||||||| ||| | || || || || | | | || || || ||||| Sbjct 15833 GAGCGATATCCCGGCACTGTCAGATTTGATCACCAGTATGGTGGCCA-GC--GGCTATGA 15889 Query 7862 CTATCAGCGGGATGATGAAATGGCCACCTGGGGTTCAGTCGATTTCACGTACTTAATCAC 7921 ||| | ||| || ||||| || | ||| |||||| |||| | || || | || || Sbjct 15890 CTACCGGCGCGACGATGATGCGGGCTTGTGGAGTTCAGCCGATCTGACTTATGTCATTAC 15949 Query 7922 CTATTCAATTTAAGAGGTACTTATGCCTACTCCAAACCCGCTGGCCCCCGTGAAAGGTGC 7981 |||| ||| | |||| ||||||| ||||| || || ||||||||||| Sbjct 15950 CTATGAAATGT--GAGGACGCTATGCCTGTACCAAATCCTACAATGCCGGTGAAAGGTGC 16007 Query 7982 CGGTACCACACTCTGGCTTTACACCGGAACGGGCAACGCTTTCGCTAACCCACTCTCGGA 8041 ||| ||||| || ||| |||| | || | || || ||| ||| || || || || || Sbjct 16008 CGGGACCACCCTGTGGGTTTATAAGGGGAGCGGTGACCCTTACGCGAATCCGCTTTCAGA 16067 Query 8042 TATCGACTGGAACCGCCTGGCGAAAATTAAAGAGCTGACGCCGGGCGAAATGACCGCAGA 8101 | |||||| || ||||| ||| ||||||| |||||||| |||||| ||||||| || Sbjct 16068 CGTTGACTGGTCGCGTCTGGCAAAAGTTAAAGACCTGACGCCCGGCGAACTGACCGCTGA 16127 Query 8102 ATCGTATGACGACACTTACCTCGACGACGAGGATGCCGACTGGAACGCGACGGCCCAGGG 8161 || |||||||||| || ||||| || || ||||| ||||||| ||||| | ||||| Sbjct 16128 GTCCTATGACGACAGCTATCTCGATGATGAAGATGCAGACTGGACTGCGACCGGGCAGGG 16187 Query 8162 GGCAAAATCTGCTGGCGATACCTCGTTCACCCTCGCCTGGAAGCCGGGCGAAGAAGGGCA 8221 | |||||||| || |||||| ||||| || || |||| ||| || || | ||||| Sbjct 16188 GCAGAAATCTGCCGGAGATACCAGCTTCACGCTGGCGTGGATGCCCGGAGAGCAGGGGCA 16247 Query 8222 AAAAGACCTTGTCGCATGGTTTATTGATGGCTCAGTACGTTATTACAAAATCAAATACCC 8281 | | || | || ||||||| ||| ||| ||| || |||||| | ||| Sbjct 16248 GCAGGCGCTGCTGGCGTGGTTTAATGAAGGCGATACCCGTGCCTATAAAATCCGCTTCCC 16307 Query 8282 GAACGGTACCGTCGACGTTTTCTGTGGCTGGTGCAGCAGCCTGGGTAAAGCCATTCCGGC 8341 |||||| || ||||| || ||| |||||||| |||||| | ||||| || | |||| Sbjct 16308 GAACGGCACGGTCGATGTGTTCCGTGGCTGGGTCAGCAGTATCGGTAAGGCGGTGACGGC 16367 Query 8342 AAAAGAGGTCATTACCCGTACAGCGAAAATCACCAAT 8378 || || || || ||||| || | |||| |||||||| Sbjct 16368 GAAGGAAGTGATCACCCGCACGGTGAAAGTCACCAAT 16404 Score = 232 bits (256), Expect = 2e-56 Identities = 298/411 (73%), Gaps = 0/411 (0%) Strand=Plus/Plus Query 7968 CCCGTGAAAGGTGCCGGTACCACACTCTGGCTTTACACCGGAACGGGCAACGCTTTCGCT 8027 || |||||||||||||| ||||| || ||| |||| | || | || || ||| ||| Sbjct 20574 CCGGTGAAAGGTGCCGGGACCACCCTGTGGGTTTATAAGGGGAGCGGTGACCCTTACGCG 20633 Query 8028 AACCCACTCTCGGATATCGACTGGAACCGCCTGGCGAAAATTAAAGAGCTGACGCCGGGC 8087 || || || || || | |||||| || ||||| ||| ||||||| |||||||| ||| Sbjct 20634 AATCCGCTTTCAGACGTTGACTGGTCGCGTCTGGCAAAAGTTAAAGACCTGACGCCCGGC 20693 Query 8088 GAAATGACCGCAGAATCGTATGACGACACTTACCTCGACGACGAGGATGCCGACTGGAAC 8147 ||| ||||||| || || |||||||||| || ||||| || || ||||| ||||||| Sbjct 20694 GAACTGACCGCTGAGTCCTATGACGACAGCTATCTCGATGATGAAGATGCAGACTGGACT 20753 Query 8148 GCGACGGCCCAGGGGGCAAAATCTGCTGGCGATACCTCGTTCACCCTCGCCTGGAAGCCG 8207 ||||| | |||||| |||||||| || |||||| ||||| || || |||| ||| Sbjct 20754 GCGACCGGGCAGGGGCAGAAATCTGCCGGAGATACCAGCTTCACGCTGGCGTGGATGCCC 20813 Query 8208 GGCGAAGAAGGGCAAAAAGACCTTGTCGCATGGTTTATTGATGGCTCAGTACGTTATTAC 8267 || || | ||||| | | || | || ||||||| ||| ||| ||| || Sbjct 20814 GGAGAGCAGGGGCAGCAGGCGCTGCTGGCGTGGTTTAATGAAGGCGATACCCGTGCCTAT 20873 Query 8268 AAAATCAAATACCCGAACGGTACCGTCGACGTTTTCTGTGGCTGGTGCAGCAGCCTGGGT 8327 |||||| | ||||||||| || ||||| || ||| |||||||| |||||| | ||| Sbjct 20874 AAAATCCGCTTCCCGAACGGCACGGTCGATGTGTTCCGTGGCTGGGTCAGCAGTATCGGT 20933 Query 8328 AAAGCCATTCCGGCAAAAGAGGTCATTACCCGTACAGCGAAAATCACCAAT 8378 || || | |||| || || || || ||||| || | |||| |||||||| Sbjct 20934 AAGGCGGTGACGGCGAAGGAAGTGATCACCCGCACGGTGAAAGTCACCAAT 20984 Score = 131 bits (144), Expect = 5e-26 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 11569 CTTCTCACCCTTCAGGCCCAGCTTAAAACGCTCGAGCAGCATATCAGCGTAAACGACGTT 11628 || || || |||||||| | || ||||| ||| ||||| | | | ||| || Sbjct 18979 CTGCTGACGCTTCAGGCAGAACTCCGGACGCTGGAGAAGCATGCCGGAGCAAATGAGAAA 19038 Query 11629 ATCAGCAAACAGCGTCAGGATCTCTGGCAGACTGAAAATCAGTTCACCGTTCTGCAGGAG 11688 |||||| | ||||| | |||| | ||| || | || | ||||||| | || ||| ||||| Sbjct 19039 ATCAGCCAGCAGCGCCGGGATTTGTGGAAGGCGGAGAGTCAGTTCGCGGTACTGGAGGAG 19098 Query 11689 GCCGCGGGGCGTCGTCAGCTTACGGCGCAGGAAAAATCACTGCTGGCGCACAAGGAAGAA 11748 || ||| ||||| ||||| | || ||||| ||||| ||||||||||| || || || Sbjct 19099 GCGGCGCAACGTCGCCAGCTGTCTGCACAGGAGAAATCCCTGCTGGCGCATAAAGATGAG 19158 Query 11749 ACGCTCGAGTACAAGCGGCAGCTGGCCGACCTGGGAGATAAGGTT 11793 ||||| |||||||| || |||||||| | || || || |||||| Sbjct 19159 ACGCTGGAGTACAAACGCCAGCTGGCTGCACTTGGCGACAAGGTT 19203 Score = 131 bits (144), Expect = 5e-26 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 11569 CTTCTCACCCTTCAGGCCCAGCTTAAAACGCTCGAGCAGCATATCAGCGTAAACGACGTT 11628 || || || |||||||| | || ||||| ||| ||||| | | | ||| || Sbjct 23559 CTGCTGACGCTTCAGGCAGAACTCCGGACGCTGGAGAAGCATGCCGGAGCAAATGAGAAA 23618 Query 11629 ATCAGCAAACAGCGTCAGGATCTCTGGCAGACTGAAAATCAGTTCACCGTTCTGCAGGAG 11688 |||||| | ||||| | |||| | ||| || | || | ||||||| | || ||| ||||| Sbjct 23619 ATCAGCCAGCAGCGCCGGGATTTGTGGAAGGCGGAGAGTCAGTTCGCGGTACTGGAGGAG 23678 Query 11689 GCCGCGGGGCGTCGTCAGCTTACGGCGCAGGAAAAATCACTGCTGGCGCACAAGGAAGAA 11748 || ||| ||||| ||||| | || ||||| ||||| ||||||||||| || || || Sbjct 23679 GCGGCGCAACGTCGCCAGCTGTCTGCACAGGAGAAATCCCTGCTGGCGCATAAAGATGAG 23738 Query 11749 ACGCTCGAGTACAAGCGGCAGCTGGCCGACCTGGGAGATAAGGTT 11793 ||||| |||||||| || |||||||| | || || || |||||| Sbjct 23739 ACGCTGGAGTACAAACGCCAGCTGGCTGCACTTGGCGACAAGGTT 23783 Score = 123 bits (136), Expect = 7e-24 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 9106 GTTACCGCGGAAAAGCCCTTGCCAGCGAGCTGAAGTTTGTCCTGAATCTGGCGCGCGAGT 9165 ||| | |||| |||| | | | | ||||||| |||| |||||| |||||||| ||| Sbjct 17116 GTTTCTGCGGGAAAGTGTTCGACGGTGAGCTGAGTTTTGCCCTGAAACTGGCGCGTGAGA 17175 Query 9166 TCGGTCGACCCGACTGGCGCGCCATGCTGGCTGGGATGACTTCCAGTGAACTGGGCGACT 9225 | || |||||||||||||| |||||||| || |||||| | |||| || | ||||| Sbjct 17176 TGGGGCGACCCGACTGGCGTGCCATGCTTGCCGGGATGTCATCCACGGAGTATGCCGACT 17235 Query 9226 GGCACCTGTTCTACCGGGAGCATTATTTTCAGGACGCGCAGCTCGATGCGCATTTCTCCG 9285 |||||| || ||| | ||||||||||| || | | ||| ||| ||| || |||| Sbjct 17236 GGCACCGCTTTTACAGTACCCATTATTTTCATGATGTTCTGCTGGATATGCACTTTTCCG 17295 Query 9286 GGCTGCTTTATTCCATCTCCACTCTTTTCTTCCGCGATCCGGA 9328 ||||| || || | || || || ||| |||||||||| Sbjct 17296 GGCTGACGTACACCGTGCTCAGCCTGTTTTTCAGCGATCCGGA 17338 Score = 123 bits (136), Expect = 7e-24 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 9106 GTTACCGCGGAAAAGCCCTTGCCAGCGAGCTGAAGTTTGTCCTGAATCTGGCGCGCGAGT 9165 ||| | |||| |||| | | | | ||||||| |||| |||||| |||||||| ||| Sbjct 21696 GTTTCTGCGGGAAAGTGTTCGACGGTGAGCTGAGTTTTGCCCTGAAACTGGCGCGTGAGA 21755 Query 9166 TCGGTCGACCCGACTGGCGCGCCATGCTGGCTGGGATGACTTCCAGTGAACTGGGCGACT 9225 | || |||||||||||||| |||||||| || |||||| | |||| || | ||||| Sbjct 21756 TGGGGCGACCCGACTGGCGTGCCATGCTTGCCGGGATGTCATCCACGGAGTATGCCGACT 21815 Query 9226 GGCACCTGTTCTACCGGGAGCATTATTTTCAGGACGCGCAGCTCGATGCGCATTTCTCCG 9285 |||||| || ||| | ||||||||||| || | | ||| ||| ||| || |||| Sbjct 21816 GGCACCGCTTTTACAGTACCCATTATTTTCATGATGTTCTGCTGGATATGCACTTTTCCG 21875 Query 9286 GGCTGCTTTATTCCATCTCCACTCTTTTCTTCCGCGATCCGGA 9328 ||||| || || | || || || ||| |||||||||| Sbjct 21876 GGCTGACGTACACCGTGCTCAGCCTGTTTTTCAGCGATCCGGA 21918 Score = 120 bits (132), Expect = 8e-23 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 12346 GGCGGTTTTACCGGGCACGGCGGCAAGTACGAGCCAGCCGGTATCGTTCACCGCGGGGAA 12405 || || ||||| || ||||||||| || |||||||| || || |||||||| || || Sbjct 19762 GGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCACCGTGGTGAG 19821 Query 12406 TTCGTCTTCACCAAAGAATCAACCAGCCGCATCGGCGTGGCTAATCTCTATCGCCTGATG 12465 || |||||||| || || |||||||||| || ||||||| ||||| || || |||||| Sbjct 19822 TTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTTTACCGGCTGATG 19881 Query 12466 CGCGGGTATGCCTCGGGTGGTCTGGTCGG 12494 ||||| |||||| | || ||| ||||| Sbjct 19882 CGCGGCTATGCCACCGGCGGTTATGTCGG 19910 Score = 120 bits (132), Expect = 8e-23 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 12346 GGCGGTTTTACCGGGCACGGCGGCAAGTACGAGCCAGCCGGTATCGTTCACCGCGGGGAA 12405 || || ||||| || ||||||||| || |||||||| || || |||||||| || || Sbjct 24342 GGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCACCGTGGTGAG 24401 Query 12406 TTCGTCTTCACCAAAGAATCAACCAGCCGCATCGGCGTGGCTAATCTCTATCGCCTGATG 12465 || |||||||| || || |||||||||| || ||||||| ||||| || || |||||| Sbjct 24402 TTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTTTACCGGCTGATG 24461 Query 12466 CGCGGGTATGCCTCGGGTGGTCTGGTCGG 12494 ||||| |||||| | || ||| ||||| Sbjct 24462 CGCGGCTATGCCACCGGCGGTTATGTCGG 24490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136773211088528