Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq493 1160 0.0 >seq493 Length=52014 Score = 1160 bits (1286), Expect = 0.0 Identities = 1220/1597 (76%), Gaps = 8/1597 (1%) Strand=Plus/Plus Query 20476 TGACAAAAAATTAGCGCAAGAAGACAAAAATCACCTTGCGCTAATGCTCTGTCTCAGGTC 20535 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 45500 TGACAAAAAATTAGCGCAAGAAGACAAAAATCACCTTGCGCTAATGCTCTGTTACAGGTC 45559 Query 20536 ACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGCGTTTTGTCGCATTA 20595 |||||||| ||||||||||||||||||||||||||| |||||||| ||||| | |||| Sbjct 45560 ACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAGTATTA 45619 Query 20596 TGTAGTCTATCATTTAACCACAGATTAGTGTAATGCGATGATTTTTAAGTGATTA-ATGT 20654 |||||||| | |||| || | || | |||| |||| |||| | ||| | || Sbjct 45620 TGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTTTACGT 45679 Query 20655 TATTTTGTCATCCTTTAGGTGAATAAGTTGTATATTTAAAATCTCTTTAATTATCAGTAA 20714 | | ||| | ||| | | ||||||| | ||||| | || |||||| | Sbjct 45680 TTCTCGTTCAGCTTTTTTAT-ACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTT 45738 Query 20715 ATT--AATGTAAGTAGGTCATTATTAGTCAAAATAAAATCATTTGTCGATTTCAATTTTG 20772 || || | | |||||| ||| |||||||||||||||||| | ||||||||||||| Sbjct 45739 GTTGCAACGAAC--AGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTG 45796 Query 20773 TCCCATTCCCGTCCACGGCTGTCCCTATACCGCGCCGCCATTGAATCTGATTTATGCCCG 20832 ||||| |||| || | | || | |||| | | ||||| | || || ||||||||| Sbjct 45797 TCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCG 45856 Query 20833 AGAAGACGTTGAGCAAACTTATCGCCAATCTGGTTCCGGTATAGCCTCGCTGACAGGCTA 20892 |||||| |||||||||||||||||| ||||| ||| || || || || |||| || Sbjct 45857 AGAAGATGTTGAGCAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTG 45916 Query 20893 CGCAGTTCATGGAATGTTGGCGGGTTTCCATCAAATGAGAGTCCAGATGCATTTCTCGCC 20952 |||| || || || || ||||| | || || || || || || ||||| |||| || Sbjct 45917 CGCAACTCGTGAAAGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTCGTGCG 45976 Query 20953 TTTGTAAAATACTTTGATACTGTTTTCGGGGAAAGCGGATCGTGATGCTTTGATGCGATT 21012 |||||||| |||||||||| | |||||||| ||| || | | ||||| ||| Sbjct 45977 CGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATGCAATT 46036 Query 21013 ATAGTTTCACTGCTGCTGGCCTCCCTGCATTGCTGTAGTGTATCAGCCAATGAGATATTG 21072 || ||||| | || ||| |||||| | ||||| || || ||| || | Sbjct 46037 ATGGTTTCTCCGCCAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATATTCCG 46096 Query 21073 AGCGCGTCAATCGTTAGCGTTAGTGGAATGGCGAGTTTAGCCCCTGTTTTACTCTGTTCA 21132 || || ||||| | | | ||| ||||| | ||| | |||||||| || || || Sbjct 46097 AGAGCATCAATATGCAATGCTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCG 46156 Query 21133 ATGTGAAGATGGTTGTCGTTTATGTCTGACCATTTCATTCTGCACAAATCGCCTACTCTC 21192 | | ||||| || || || ||||| |||||| ||| ||||| || |||| Sbjct 46157 ACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGT 46216 Query 21193 TGCCCTGTAACGACAGCCAAATCCATTGCCAGTCTCAGCCAGATTGGGAGCGGTTCGGCC 21252 ||||| ||||| ||||||| |||||||| ||||| ||||| ||| | ||| || Sbjct 46217 TGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATTCTGCT 46276 Query 21253 GCATGGTATATCGCGACATATTCATTAGCTGTCAGTCTTGAACGCCTTACTTCTGATTTT 21312 || || || || | ||||| | ||| || |||||||| | |||||| ||||||||| Sbjct 46277 GCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTT 46336 Query 21313 GCTGTGCGGGTTGCTGTTACCGGATTCGTAGCCACATGCCCCTCGGCTATTGCCTCACGA 21372 |||| ||| || || | || | || || | | ||| || || ||||||||||| || Sbjct 46337 GCTGCGCGAGTGGCAGCGACATGGTTTGTTGTTATATGGCCTTCAGCTATTGCCTCTCGG 46396 Query 21373 AAAACGTCAACAAGGGTTGACCTGATTAATTTTGCGGAAGCCGATTTGCCTTCTGCTACG 21432 || | || || ||||| |||||||| || || || |||| ||||| || ||| | Sbjct 46397 AATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGACGCCGCCTTGCCCTCGTCTATG 46456 Query 21433 TAGGTGTTTAGCATTGCTGCCACCTCTTTCGTTGATATGTCAGCGAGCGGTTTGTCAGGC 21492 || || |||||||| || | ||||| || | ||||| | || || |||||| Sbjct 46457 TATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGC 46516 Query 21493 AATTTTCTTCGGATTGCTCTGATTTTGCTGGCGTAGTCGAGTAGAGTTTTCGGCCTGATA 21552 | || | |||||| | |||||||| ||| | | || || ||| || |||| Sbjct 46517 AGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATT 46576 Query 21553 CCCCT-CTCGCTGAGGATTGTTTCATATCGGTCAAGCCACGCATGAAGAGTGATTGCGTC 21611 || || || || |||||| |||| || || |||||||| | ||| | || | | | Sbjct 46577 CCTCTGCTGGC-CAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGGAATT 46635 Query 21612 AGCGCCTTTAATTCTGTCTATCAGTGACTCACGCCTGTTCCCGGATAGCAACTCAATGTT 21671 | | | || ||||| || |||| | || | ||| || || | ||||||||||| Sbjct 46636 ATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTT 46695 Query 21672 GGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTTTACC 21731 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 46696 GGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCTGCCTAATCCAAACTCTTTACC 46755 Query 21732 CGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAA 21791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46756 CGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAA 46815 Query 21792 ATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTATCTG 21851 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 46816 ATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCCACCTG 46875 Query 21852 TTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCAT 21911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46876 TTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCAT 46935 Query 21912 CCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCAAGGC 21971 ||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||| Sbjct 46936 CCTTAACCGGAGGTGGGAATATCCTGCATTCCCGAACCCATCGACGAACTGTTTCAAGGC 46995 Query 21972 TTCTTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTC 22031 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 46996 TTCTTGGACGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTC 47055 Query 22032 CGCAATTACACGCAAGAAAAAGCCGCATTGATGCGGC 22068 ||||||||||||||||||||| |||| | | ||||| Sbjct 47056 CGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGC 47092 Score = 1160 bits (1286), Expect = 0.0 Identities = 1220/1597 (76%), Gaps = 8/1597 (1%) Strand=Plus/Plus Query 20476 TGACAAAAAATTAGCGCAAGAAGACAAAAATCACCTTGCGCTAATGCTCTGTCTCAGGTC 20535 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 48280 TGACAAAAAATTAGCGCAAGAAGACAAAAATCACCTTGCGCTAATGCTCTGTTACAGGTC 48339 Query 20536 ACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGCGTTTTGTCGCATTA 20595 |||||||| ||||||||||||||||||||||||||| |||||||| ||||| | |||| Sbjct 48340 ACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAGTATTA 48399 Query 20596 TGTAGTCTATCATTTAACCACAGATTAGTGTAATGCGATGATTTTTAAGTGATTA-ATGT 20654 |||||||| | |||| || | || | |||| |||| |||| | ||| | || Sbjct 48400 TGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTTTACGT 48459 Query 20655 TATTTTGTCATCCTTTAGGTGAATAAGTTGTATATTTAAAATCTCTTTAATTATCAGTAA 20714 | | ||| | ||| | | ||||||| | ||||| | || |||||| | Sbjct 48460 TTCTCGTTCAGCTTTTTTAT-ACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTT 48518 Query 20715 ATT--AATGTAAGTAGGTCATTATTAGTCAAAATAAAATCATTTGTCGATTTCAATTTTG 20772 || || | | |||||| ||| |||||||||||||||||| | ||||||||||||| Sbjct 48519 GTTGCAACGAAC--AGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTG 48576 Query 20773 TCCCATTCCCGTCCACGGCTGTCCCTATACCGCGCCGCCATTGAATCTGATTTATGCCCG 20832 ||||| |||| || | | || | |||| | | ||||| | || || ||||||||| Sbjct 48577 TCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCG 48636 Query 20833 AGAAGACGTTGAGCAAACTTATCGCCAATCTGGTTCCGGTATAGCCTCGCTGACAGGCTA 20892 |||||| |||||||||||||||||| ||||| ||| || || || || |||| || Sbjct 48637 AGAAGATGTTGAGCAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTG 48696 Query 20893 CGCAGTTCATGGAATGTTGGCGGGTTTCCATCAAATGAGAGTCCAGATGCATTTCTCGCC 20952 |||| || || || || ||||| | || || || || || || ||||| |||| || Sbjct 48697 CGCAACTCGTGAAAGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTCGTGCG 48756 Query 20953 TTTGTAAAATACTTTGATACTGTTTTCGGGGAAAGCGGATCGTGATGCTTTGATGCGATT 21012 |||||||| |||||||||| | |||||||| ||| || | | ||||| ||| Sbjct 48757 CGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATGCAATT 48816 Query 21013 ATAGTTTCACTGCTGCTGGCCTCCCTGCATTGCTGTAGTGTATCAGCCAATGAGATATTG 21072 || ||||| | || ||| |||||| | ||||| || || ||| || | Sbjct 48817 ATGGTTTCTCCGCCAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATATTCCG 48876 Query 21073 AGCGCGTCAATCGTTAGCGTTAGTGGAATGGCGAGTTTAGCCCCTGTTTTACTCTGTTCA 21132 || || ||||| | | | ||| ||||| | ||| | |||||||| || || || Sbjct 48877 AGAGCATCAATATGCAATGCTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCG 48936 Query 21133 ATGTGAAGATGGTTGTCGTTTATGTCTGACCATTTCATTCTGCACAAATCGCCTACTCTC 21192 | | ||||| || || || ||||| |||||| ||| ||||| || |||| Sbjct 48937 ACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGT 48996 Query 21193 TGCCCTGTAACGACAGCCAAATCCATTGCCAGTCTCAGCCAGATTGGGAGCGGTTCGGCC 21252 ||||| ||||| ||||||| |||||||| ||||| ||||| ||| | ||| || Sbjct 48997 TGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATTCTGCT 49056 Query 21253 GCATGGTATATCGCGACATATTCATTAGCTGTCAGTCTTGAACGCCTTACTTCTGATTTT 21312 || || || || | ||||| | ||| || |||||||| | |||||| ||||||||| Sbjct 49057 GCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTT 49116 Query 21313 GCTGTGCGGGTTGCTGTTACCGGATTCGTAGCCACATGCCCCTCGGCTATTGCCTCACGA 21372 |||| ||| || || | || | || || | | ||| || || ||||||||||| || Sbjct 49117 GCTGCGCGAGTGGCAGCGACATGGTTTGTTGTTATATGGCCTTCAGCTATTGCCTCTCGG 49176 Query 21373 AAAACGTCAACAAGGGTTGACCTGATTAATTTTGCGGAAGCCGATTTGCCTTCTGCTACG 21432 || | || || ||||| |||||||| || || || |||| ||||| || ||| | Sbjct 49177 AATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGACGCCGCCTTGCCCTCGTCTATG 49236 Query 21433 TAGGTGTTTAGCATTGCTGCCACCTCTTTCGTTGATATGTCAGCGAGCGGTTTGTCAGGC 21492 || || |||||||| || | ||||| || | ||||| | || || |||||| Sbjct 49237 TATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGC 49296 Query 21493 AATTTTCTTCGGATTGCTCTGATTTTGCTGGCGTAGTCGAGTAGAGTTTTCGGCCTGATA 21552 | || | |||||| | |||||||| ||| | | || || ||| || |||| Sbjct 49297 AGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATT 49356 Query 21553 CCCCT-CTCGCTGAGGATTGTTTCATATCGGTCAAGCCACGCATGAAGAGTGATTGCGTC 21611 || || || || |||||| |||| || || |||||||| | ||| | || | | | Sbjct 49357 CCTCTGCTGGC-CAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGGAATT 49415 Query 21612 AGCGCCTTTAATTCTGTCTATCAGTGACTCACGCCTGTTCCCGGATAGCAACTCAATGTT 21671 | | | || ||||| || |||| | || | ||| || || | ||||||||||| Sbjct 49416 ATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTT 49475 Query 21672 GGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTTTACC 21731 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 49476 GGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCTGCCTAATCCAAACTCTTTACC 49535 Query 21732 CGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAA 21791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49536 CGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAA 49595 Query 21792 ATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTATCTG 21851 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 49596 ATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCCACCTG 49655 Query 21852 TTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCAT 21911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49656 TTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCAT 49715 Query 21912 CCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCAAGGC 21971 ||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||| Sbjct 49716 CCTTAACCGGAGGTGGGAATATCCTGCATTCCCGAACCCATCGACGAACTGTTTCAAGGC 49775 Query 21972 TTCTTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTC 22031 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 49776 TTCTTGGACGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTC 49835 Query 22032 CGCAATTACACGCAAGAAAAAGCCGCATTGATGCGGC 22068 ||||||||||||||||||||| |||| | | ||||| Sbjct 49836 CGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGC 49872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120181355314488