Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq493 441 2e-119 >seq493 Length=52014 Score = 441 bits (488), Expect = 2e-119 Identities = 256/264 (97%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 22734 CAGGCAAAAAGAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 22793 || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47064 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 47123 Query 22794 TTGGTTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCGTTG 22853 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 47124 TTGGTTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCGTAGCAGTCGTTG 47183 Query 22854 ATGTTCTCCGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCACCTGTGACTCGG 22913 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 47184 ATGTTCTCCGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCTCCTGTGACTCGG 47243 Query 22914 AAGTGCATTTATCATCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAAT 22973 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 47244 AAGTGCATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAAT 47303 Query 22974 CCCCGAGAGTGCGAGGATTGTTAT 22997 ||||| |||||||||||||||||| Sbjct 47304 CCCCGCGAGTGCGAGGATTGTTAT 47327 Score = 441 bits (488), Expect = 2e-119 Identities = 256/264 (97%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 22734 CAGGCAAAAAGAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 22793 || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49844 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 49903 Query 22794 TTGGTTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCGTTG 22853 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 49904 TTGGTTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCGTAGCAGTCGTTG 49963 Query 22854 ATGTTCTCCGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCACCTGTGACTCGG 22913 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 49964 ATGTTCTCCGCTTCGATAACTCTGTTGAATGGCTCTCCATTCCATTCTCCTGTGACTCGG 50023 Query 22914 AAGTGCATTTATCATCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAAT 22973 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 50024 AAGTGCATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAAT 50083 Query 22974 CCCCGAGAGTGCGAGGATTGTTAT 22997 ||||| |||||||||||||||||| Sbjct 50084 CCCCGCGAGTGCGAGGATTGTTAT 50107 Score = 167 bits (184), Expect = 6e-37 Identities = 114/129 (88%), Gaps = 7/129 (5%) Strand=Plus/Plus Query 24729 ATTTTGCTGTCTTTGCCTTCCAGCTCAACGCGCAGCTTCCCTACCGTTAGCGCAATTTCC 24788 |||||||||| ||| |||||||| ||||| |||||||| ||||||||||| ||| Sbjct 48133 ATTTTGCTGT-------TTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCC 48185 Query 24789 TCGTTCTCCTGGTCACGGCGTTTTATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGT 24848 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 48186 TCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGT 48245 Query 24849 GCCAGCACA 24857 |||||||| Sbjct 48246 TCCAGCACA 48254 Score = 167 bits (184), Expect = 6e-37 Identities = 114/129 (88%), Gaps = 7/129 (5%) Strand=Plus/Plus Query 24729 ATTTTGCTGTCTTTGCCTTCCAGCTCAACGCGCAGCTTCCCTACCGTTAGCGCAATTTCC 24788 |||||||||| ||| |||||||| ||||| |||||||| ||||||||||| ||| Sbjct 50913 ATTTTGCTGT-------TTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCC 50965 Query 24789 TCGTTCTCCTGGTCACGGCGTTTTATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGT 24848 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 50966 TCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGT 51025 Query 24849 GCCAGCACA 24857 |||||||| Sbjct 51026 TCCAGCACA 51034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130149268667648