Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq493 241 3e-59 >seq493 Length=52014 Score = 241 bits (266), Expect = 3e-59 Identities = 141/146 (97%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23097 CATTTCTTGTCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCG 23156 ||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 47249 CATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCG 47308 Query 23157 CGAGTGCGAGGATTGTTATGTAATATTGGGTTTAATCATCTATATGTTTTGTACAGAGAG 23216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47309 CGAGTGCGAGGATTGTTATGTAATATTGGGTTTAATCATCTATATGTTTTGTACAGAGAG 47368 Query 23217 GGCAAGTATCGTTTCCACCGTACTCG 23242 |||||||||||||||||||||||||| Sbjct 47369 GGCAAGTATCGTTTCCACCGTACTCG 47394 Score = 241 bits (266), Expect = 3e-59 Identities = 141/146 (97%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23097 CATTTCTTGTCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCG 23156 ||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 50029 CATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCG 50088 Query 23157 CGAGTGCGAGGATTGTTATGTAATATTGGGTTTAATCATCTATATGTTTTGTACAGAGAG 23216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50089 CGAGTGCGAGGATTGTTATGTAATATTGGGTTTAATCATCTATATGTTTTGTACAGAGAG 50148 Query 23217 GGCAAGTATCGTTTCCACCGTACTCG 23242 |||||||||||||||||||||||||| Sbjct 50149 GGCAAGTATCGTTTCCACCGTACTCG 50174 Score = 80.6 bits (88), Expect = 7e-11 Identities = 83/106 (78%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 20519 GCCGCAACCATGCCGTATGCAAGAGCATGATTGCGGCCGACTAGCGAACGTTCGATAGTG 20578 |||||| || | |||||||| || | || | ||||| | || | |||| | |||||||| Sbjct 39891 GCCGCAGACACGTCGTATGCAGGAACGTGCT-GCGGCTGGCTGGTGAACTTCCGATAGTG 39949 Query 20579 CGAGTATTGAATGATTTCAAGCCGTTACCGATTTTAC-TATGTTTT 20623 || || |||||||||||| || | |||||||||||| ||| |||| Sbjct 39950 CGGGTGTTGAATGATTTCCAGTTGCTACCGATTTTACATATTTTTT 39995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126526900155360