Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq493 145 2e-30 >seq493 Length=52014 Score = 145 bits (160), Expect = 2e-30 Identities = 103/119 (87%), Gaps = 7/119 (6%) Strand=Plus/Plus Query 23946 ATTTTGCTGTCTTTGCCTTCCAGCTCAACGCGCAGCCTCCCTACCGTTAGCGCAATTTCC 24005 |||||||||| ||| |||||||| ||||| ||||||| ||||||||||| ||| Sbjct 48133 ATTTTGCTGT-------TTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCC 48185 Query 24006 TCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGTTTTCTTTCCAGCTCATCCAGCAG 24064 ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| Sbjct 48186 TCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAG 48244 Score = 145 bits (160), Expect = 2e-30 Identities = 103/119 (87%), Gaps = 7/119 (6%) Strand=Plus/Plus Query 23946 ATTTTGCTGTCTTTGCCTTCCAGCTCAACGCGCAGCCTCCCTACCGTTAGCGCAATTTCC 24005 |||||||||| ||| |||||||| ||||| ||||||| ||||||||||| ||| Sbjct 50913 ATTTTGCTGT-------TTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCC 50965 Query 24006 TCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGTTTTCTTTCCAGCTCATCCAGCAG 24064 ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| Sbjct 50966 TCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAG 51024 Score = 114 bits (126), Expect = 3e-21 Identities = 66/68 (97%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 22501 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 22560 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47064 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 47123 Query 22561 TTGGTTAC 22568 |||||||| Sbjct 47124 TTGGTTAC 47131 Score = 114 bits (126), Expect = 3e-21 Identities = 66/68 (97%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 22501 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 22560 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49844 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 49903 Query 22561 TTGGTTAC 22568 |||||||| Sbjct 49904 TTGGTTAC 49911 Score = 113 bits (124), Expect = 1e-20 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 20676 GTCGTATGCAAGAACGGGCGGCGGCTGGCTGGCGAACTTACGATAGTGCGAGTATTGAAT 20735 |||||||||| ||||| || |||||||||||| |||||| |||||||||| || |||||| Sbjct 39902 GTCGTATGCAGGAACGTGCTGCGGCTGGCTGGTGAACTTCCGATAGTGCGGGTGTTGAAT 39961 Query 20736 GATTTCCAGCCGTTACCGATTTTAC-TATGTTTT 20768 ||||||||| | |||||||||||| ||| |||| Sbjct 39962 GATTTCCAGTTGCTACCGATTTTACATATTTTTT 39995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132766845914160