Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 2e-14 seq285 91.5 6e-14 >seq5 Length=3486096 Score = 93.3 bits (102), Expect = 2e-14 Identities = 130/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 9846 ACCGAGTGGCACCGCGTCGCCTTCTTCGGCCGCCTCGCCGAGATCGTCGACGAGCACCTG 9905 || || |||||||| || | |||||| || || || ||||||| || ||| ||||| Sbjct 756397 ACTGAATGGCACCGTGTTGTGTTCTTCAATCGTCTGGCTGAGATCGCCGGCGAATACCTG 756456 Query 9906 CGCAAGGGC-GCATCGGTCTACATCGAGGG-GCGCATCAAAACGCGGAAGTGGCAGGATC 9963 || || ||| |||||| || ||||| ||| | | |||||| || ||||| | || Sbjct 756457 AAAAAAGGTAGCAA-GGTCTATATAGAGGGTGCGT-TGAGAACGCGCAAATGGCAAGGTC 756514 Query 9964 AATCCGGCCAGGATCGCTACACGACCGAGATCGTCGCCGACAAGATGCAGATGCTCG 10020 | ||||||||||| ||||| || ||||| || ||| || | ||||||||||||| Sbjct 756515 AGGATGGCCAGGATCGTTACACCACAGAGATTGTTGCCAACGAAATGCAGATGCTCG 756571 >seq285 Length=160511 Score = 91.5 bits (100), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 9892 TCGACGAGCAC---CTGCGCAAGGGCGCATCGGTCTACATCGAGGGGCGCATCAAAACGC 9948 ||| |||||| |||||||||||| | |||||| |||||||| | | |||| | Sbjct 22667 TCGCCGAGCAATATCTGCGCAAGGGCTCCAAGGTCTATATCGAGGGCCAGCTGGAAACCC 22608 Query 9949 GGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATCGT 9997 | || ||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 22607 GCAAATGGCAGGATCAGTCCGGCCAGGATCGCTATTCGACCGAGGTCGT 22559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201319803959676