Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq562 165 1e-35 seq2 165 1e-35 seq4 147 3e-30 seq201 141 1e-28 seq408 93.3 7e-14 seq3 93.3 7e-14 seq377 91.5 2e-13 seq694 87.8 3e-12 seq19 84.2 3e-11 seq5 84.2 3e-11 >seq562 Length=35438 Score = 165 bits (182), Expect = 1e-35 Identities = 193/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 122398 TGACAACGGGCACGAAAAAGCAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGC 122457 |||| ||||| ||| | | ||||| || || ||||||||| |||||| |||||| Sbjct 12923 TGACCACGGGGTCGAGACGACGGACCGCACCGGTACGGGCACCTTGTCGTGTTTCGGCAT 12982 Query 122458 ACAAATGCGCTTTGACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCT 122517 ||| ||||| ||| || | || |||||||| ||||| || ||||| | ||||| Sbjct 12983 GCAACAGCGCTATGATCTTGCCGATGGCTTCCCGCTCGTCACCACGAAAAAACTGCACCT 13042 Query 122518 CCGCTCCATCATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCT 122577 ||||||||||| || |||||||||||||| | ||||||||||||||| | || || Sbjct 13043 GCGCTCCATCATTCACGAGCTTCTGTGGTTTTTGTCCGGCGATACCAACATCAAATACCT 13102 Query 122578 GAAAGACAACAACGTCAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCC 122637 ||||||||| || |||||||| || ||||| |||||| |||| | || || || Sbjct 13103 GAAAGACAATGGTGTTTCGATCTGGGACGAGTGGGCGGATGAAAATGGCGACCTTGGGCC 13162 Query 122638 GGTGTACGGTAAGCAATGGCG 122658 ||| || ||| | || ||||| Sbjct 13163 GGTCTATGGTTACCAGTGGCG 13183 >seq2 Length=6328565 Score = 165 bits (182), Expect = 1e-35 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| || ||||| || || | || || || || |||||||||||||| || Sbjct 4241308 GACCGGACCGGCACCGGTACGCGCTCTTTGTTTGGGTACCAAATGCGCTTTGATCTCGCC 4241249 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 |||| |||||||||||||||||||||||| | ||||| || || ||||| || ||||| Sbjct 4241248 GAAGGGTTCCCGCTGGTCACGACCAAAAAGCTGCACCTGCGGTCGATCATTCACGAGCTG 4241189 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 || ||||||||| ||||| ||||| ||| |||||| || || ||| ||||| ||| Sbjct 4241188 CTCTGGTTCCTCGCCGGCGACACCAATATCGGGTATCTCAAGGAAAACGGCGTCAAGATC 4241129 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 |||||||| ||||| ||||| | || | || || ||||| ||||| | || ||||| Sbjct 4241128 TGGGATGACTGGGCGGATGAGAAGGGCGAGCTTGGTCCGGTCTACGGATACCAGTGGCG 4241070 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 3312198 TGTAGCTCAGTTGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 3312140 Query 169792 GTCAGTCCTGCCA 169804 |||| || |||| Sbjct 3312139 GTCACTCGCGCCA 3312127 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 3312326 TGTAGCTCAGTTGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 3312268 Query 169792 GTCAGTCCTGCCATTT 169807 |||| || |||| || Sbjct 3312267 GTCACTCGCGCCACTT 3312252 >seq4 Length=3599618 Score = 147 bits (162), Expect = 3e-30 Identities = 208/287 (72%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 122362 CATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCAGA 122421 ||||||| |||| ||| | || || |||| || |||||| | || | ||| Sbjct 201435 CATGAAAGCCTATCACGACCTCCTTACCGATGTTCTCGAAAACGGGGAGGAGCGCGGAGA 201494 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGG-CGCACAAATGCGCTTTGACCTGCAAA 122480 ||| |||||||| ||||| || || | ||||| ||| || |||| || |||| Sbjct 201495 CCGCACGGGCACTGGCACACTCTCCGTCTTCGGTCGC-CAGGCCCGCTACGATCTGCGTG 201553 Query 122481 AAGGTTTCCCGCTGG-TCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | || || || ||| | || || || ||| |||| |||||||| |||||||| ||||| Sbjct 201554 AGGGATTTCC-CTGCCTAACCACAAAGAAGCTTCATCTCCGCTCAATCATCCACGAGCTG 201612 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||||| || || ||||||||| || ||||| || ||| ||||| ||| Sbjct 201613 CTGTGGTTCCTCAAAGGTGACACCAACATCACCTACCTGAAGGAAAACGGCGTCACCATC 201672 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGG 122646 ||||| |||||||| |||||| | || | |||||||| || ||||| Sbjct 201673 TGGGACGAATGGGCGGATGAAAACGGGGACCTCGGCCCCGTCTACGG 201719 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||| Sbjct 1117844 GTAGCTCAGTTGGT-TAGAGCGCCAGCCTGTCACGTTGGAGGTCGCGGGTTCGAGCCCCG 1117902 Query 169793 TCAGTCCTGCCAT 169805 || | | ||||| Sbjct 1117903 TCCGCTCCGCCAT 1117915 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||| Sbjct 2413871 GTAGCTCAGTTGGT-TAGAGCGCCAGCCTGTCACGTTGGAGGTCGCGGGTTCGAGCCCCG 2413929 Query 169793 TCAGTCCTGCCAT 169805 || | | ||||| Sbjct 2413930 TCCGCTCCGCCAT 2413942 >seq201 Length=246981 Score = 141 bits (156), Expect = 1e-28 Identities = 180/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| || ||||| ||||| | || | |||||| || ||||| | |||| Sbjct 14344 GACCGCACCGGCACCGGCACGATTTCCTATTTCGGCATGCAGCAGCGCTATTCCCTGGCG 14285 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | || ||||| |||||||| ||||| || | ||||| |||||| | || || || Sbjct 14284 GATGGCTTCCCCCTGGTCACAACCAAGAAACTGCACCTGAAATCCATCGTGCACGAACTG 14225 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 |||||||||||| || ||||| |||||| ||||||| || |||||| ||| ||| Sbjct 14224 CTGTGGTTCCTCGCCGGGGATACGAACATCAAGTATCTCAAGGACAACGGCGTTTCGATC 14165 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGT 122659 ||||| |||||||| || ||| | || |||| |||||||| ||||| ||||||||| Sbjct 14164 TGGGACGAATGGGCGGACGAAAACGGCGATCTGGGCCCGGTTTACGGGTCGCAATGGCGC 14105 Query 122660 GAGTGGCC 122667 | ||||| Sbjct 14104 GCCTGGCC 14097 >seq408 Length=81665 Score = 93.3 bits (102), Expect = 7e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 169731 TTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCC 169790 |||||||||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| Sbjct 77297 TTGTAGCTCAGTTGGT-TAGAGTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGCCC 77355 Query 169791 CGTCAGTCCTGCCATTTT 169808 ||||| | |||| ||| Sbjct 77356 CGTCAACCGCGCCACTTT 77373 Score = 93.3 bits (102), Expect = 7e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 169731 TTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCC 169790 |||||||||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| Sbjct 77486 TTGTAGCTCAGTTGGT-TAGAGTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGCCC 77544 Query 169791 CGTCAGTCCTGCCATTTT 169808 ||||| | |||| ||| Sbjct 77545 CGTCAACCGCGCCACTTT 77562 Score = 91.5 bits (100), Expect = 2e-13 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 169731 TTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCC 169790 |||||||||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| Sbjct 77138 TTGTAGCTCAGTTGGT-TAGAGTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGCCC 77196 Query 169791 CGTCA 169795 ||||| Sbjct 77197 CGTCA 77201 >seq3 Length=4400433 Score = 93.3 bits (102), Expect = 7e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| |||||| ||| ||||||||| ||| ||||||||||||||| ||| Sbjct 4302169 TGTAGCTCAGTTGGT-TAGAGTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCC 4302111 Query 169792 GTCAGTCCTGCCATTT 169807 |||| || ||||||| Sbjct 4302110 GTCACTCGCGCCATTT 4302095 Score = 91.5 bits (100), Expect = 2e-13 Identities = 201/299 (67%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 122362 CATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCAGA 122421 |||||| |||||||| ||||| | ||| ||| || ||||| ||| | || Sbjct 1995025 CATGAAGCAATATCTCGACTTGTTAGAAGACATTCTCGAAAACGGCGTAGAACGCGGCGA 1995084 Query 122422 CCGTACGGGCACGGGCACCCT-GTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAA 122480 ||| || || || ||||| || | ||| || | || ||||||||| || |||||| Sbjct 1995085 CCGCACCGGGACAGGCACGCTCGGCGTGTTTGGACG-ACAAATGCGGTTCGACCTGAGTG 1995143 Query 122481 AAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTC 122540 | | || || || | || || || || | || | || || ||||| || || Sbjct 1995144 AGCGATTTCCACTCCTGACCACTAAGAAATTGCATTTGCGGTCGATCATTGTCGAACTCT 1995203 Query 122541 TGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 122600 | |||||||| |||||||| || | | | || | ||| ||| || | || | Sbjct 1995204 TATGGTTCCTACGCGGCGATACAAATGTGCGCTGGTTGCAGGACCGCAAAGTTAAGATTT 1995263 Query 122601 GGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGT 122659 |||| || ||||| || || ||||| ||||||| ||||| ||||| |||||||||||| Sbjct 1995264 GGGACGAGTGGGCTGACGAGAATGGTGATCTCGGGCCGGTTTACGGCAAGCAATGGCGT 1995322 >seq377 Length=97045 Score = 91.5 bits (100), Expect = 2e-13 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 169731 TTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCC 169790 |||||||||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| Sbjct 70447 TTGTAGCTCAGTTGGT-TAGAGTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGCCC 70389 Query 169791 CGTCA 169795 ||||| Sbjct 70388 CGTCA 70384 Score = 91.5 bits (100), Expect = 2e-13 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 169731 TTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCC 169790 |||||||||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| Sbjct 70722 TTGTAGCTCAGTTGGT-TAGAGTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGCCC 70664 Query 169791 CGTCA 169795 ||||| Sbjct 70663 CGTCA 70659 Score = 91.5 bits (100), Expect = 2e-13 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 169731 TTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCC 169790 |||||||||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| Sbjct 71153 TTGTAGCTCAGTTGGT-TAGAGTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGCCC 71095 Query 169791 CGTCA 169795 ||||| Sbjct 71094 CGTCA 71090 >seq694 Length=4760 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 167023 CTAGGGGCATAGCTCAGCTGGCAGAGCACCGGTCTCCAAAACCGGGTGTCCAAGGTTCGA 167082 ||||||| ||||||||| ||| |||||| ||||||||||||||| | ||| ||||||| Sbjct 2105 CTAGGGGTATAGCTCAGTTGGTAGAGCATCGGTCTCCAAAACCGAGGGTCGCGGGTTCGA 2164 Query 167083 ATCCTTGTGCCCCTGCCA 167100 |||| ||||||||||| Sbjct 2165 GTCCTGCTGCCCCTGCCA 2182 >seq19 Length=1029424 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||| ||||||||| |||| | ||| ||||||||| ||| ||||||||||||||| |||| Sbjct 297199 GTAGTTCAGTTGGT-TAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCG 297141 Query 169793 TCAGTCCTGCCATTTTTA 169810 || | | |||||||||| Sbjct 297140 TCCGCTCCGCCATTTTTA 297123 >seq5 Length=3486096 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||| |||| |||| |||| ||||| ||||||||| ||||||||||||||||||| |||| Sbjct 1578279 GTAGTTCAGCTGGT-TAGAATGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCG 1578337 Query 169793 TCAGTCCTGCCATT-TTTAA 169811 || | | |||||| ||||| Sbjct 1578338 TCCGGTCCGCCATTATTTAA 1578357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777624884667200