Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 2e-12 seq1 84.2 2e-11 >seq5 Length=3486096 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 39736 GCTCGCGCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACC 39795 |||||||| || || |||||| | ||||| |||| | || | ||| | || || ||| Sbjct 2538982 GCTCGCGCGTGGTCTTCAACATAGAGCCAATCTCTAATTTGCTGGCCGTCGCCGTATACC 2539041 Query 39796 GGAATCTCTTTATTCGTCAAGATACTTGTGATGATTTTTGGGATCAGCTTTTCTGGATGT 39855 || | | | || | | | || ||||| | || ||||||||||| ||| Sbjct 2539042 GGCAGCGCCTTGCCAGCGAGCGCATTTAAGATGACATGCGGTATCAGCTTTTCAGGAAAA 2539101 Query 39856 TGATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGCGG 39915 ||||| |||||| | || ||||| ||||| || | | || |||||| | || |||||| Sbjct 2539102 TGATAGGGCCCATAATTGTTGGAACAGTTAGTGACTAACACCGGCAAACCATAAGTGCGG 2539161 Query 39916 TGCCAAGCTTTCACAAGATGGTCAGATGCTGCCTT 39950 ||||| ||| ||| ||||| || || |||| ||| Sbjct 2539162 TGCCATGCTCGCACCAGATGATCCGA-GCTGGCTT 2539195 >seq1 Length=7344524 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 39299 GGGTAGTAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTCACACTGCGTGTT 39358 ||||| |||||||||||||| || || ||||| | || ||||| || || ||||| Sbjct 5415530 GGGTAATAGATCATGGGTTTATCGTAAACAGGCATCAGCTGCTTACTTACGGCTAGTGTT 5415471 Query 39359 ACCGGATGAAGGCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTTCATA 39409 | |||| ||||||||||||| ||| || || | || |||||||||||| Sbjct 5415470 AGTGGATAAAGGCGGGTTCCAAGTCCACCAGCGAGGATGATACCTTTCATA 5415420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472626075431840