Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq19 147 5e-31 seq5 84.2 5e-12 >seq19 Length=1029424 Score = 147 bits (162), Expect = 5e-31 Identities = 228/321 (71%), Gaps = 5/321 (2%) Strand=Plus/Plus Query 25784 ACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTGCCACTTGCGCGTGCGC 25843 || |||| ||| || ||||| ||| ||||||| || ||||||||| |||||||| || Sbjct 986631 ACCACAACCTCGGTGGTGTAGACATCCTGACCTTCCTTGTTCTGCCATTTGCGCGTCTGC 986690 Query 25844 AACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGCC 25903 | |||||| |||||||| | ||| ||||| ||||| |||| ||||||||| || || Sbjct 986691 AGCTTGCCCTCAATGTAGACCTTCGAGCCCTTGCGCAGATACTGGCCGGCCACTTCGGCG 986750 Query 25904 AACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCTGC 25963 | ||| ||| | | ||||| |||||||| || ||||| ||| ||||| ||||| Sbjct 986751 ATCTTGCCGAACATGACAACCCGGTGCCATTCGGTTTTCGGCACCAATTGCCCGGTCTGA 986810 Query 25964 TTGTCTTTGTACTGCTCA-CTGGTGGCAATGCTTAAATTTGCCA-CGGCGGTACCGTTAG 26021 || ||||| || ||| || || | || | || || |||| ||||||||| Sbjct 986811 CGATCCTTGTAGCTTTCGTCTGTTGCCA--GATTCAGGTTCACAACGGCATTACCGTTAG 986868 Query 26022 GCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAATTC 26081 | | || | ||||||||||| || | ||| |||| | ||||| ||||| | | Sbjct 986869 GGGTGTAGCGGGTATCCGGGTCCTGTCCCAGGTTACCGATCAGAATTACTTTGTTTACGC 986928 Query 26082 CGCGTGCCATTGCGCTCCTCC 26102 | ||||||| ||| || |||| Sbjct 986929 CTCGTGCCA-TGCTCTGCTCC 986948 >seq5 Length=3486096 Score = 84.2 bits (92), Expect = 5e-12 Identities = 204/306 (67%), Gaps = 6/306 (2%) Strand=Plus/Minus Query 25785 CAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTGCCACTTGCGCGTGCGCA 25844 |||||||||| || ||||| |||| || || | ||| ||||| |||||||| | || Sbjct 756550 CAACAATCTCTGTGGTGTAACGATCCTGGCCATCCTGACCTTGCCATTTGCGCGTTCTCA 756491 Query 25845 ACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGCCA 25904 || || || || || | ||| ||||| ||| |||||||| | ||| |||| Sbjct 756490 ACGCACCCTCTATATAGACCTTGCTACCTTTTTTCAGGTATTCGCCGGCGATCTCAGCCA 756431 Query 25905 -AC--TTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCT 25961 || || | | ||||||||||||||||| || || || | |||| || |||| Sbjct 756430 GACGATT---GAAGAACACAACACGGTGCCATTCAGTACGCTCCTGCTGCTGGCCGGTCT 756374 Query 25962 GCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCACGGCGGTACCGTTAG 26021 |||||||||| | || ||| ||||| || | ||| | || ||| | ||| | | Sbjct 756373 GCTTGTCTTTCCATGTTTCGGAGGTAGCAATACTGAGATTAGTAACCGCGCTTCCGCTGG 756314 Query 26022 GCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAATTC 26081 | | |||| | ||| ||||| ||| | || || || | || || ||||| | | Sbjct 756313 GTAAATACTTTGTTTCTGGGTCGCTGCCGCAATTACCCACTAGAATGACTTTGTTTACAC 756254 Query 26082 CGCGTG 26087 | |||| Sbjct 756253 CTCGTG 756248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123659725078496