Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq318 618 1e-172 seq60 513 4e-141 >seq318 Length=132058 Score = 618 bits (684), Expect = 1e-172 Identities = 733/989 (74%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 17841 TCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTG 17900 || || |||||||| ||||| |||||||||||||||||||| | ||||||||||| | | Sbjct 94162 TCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATACCAAGGTTAGCACGG 94221 Query 17901 TTGAGTACGTCAGCCCA--TGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGATTGGT 17958 |||| | ||| |||| ||| | || || ||||| | | || | ||||||| Sbjct 94222 TTGATAATATCACCCCAAGTGTTGATAACAC--GTCCTTGTGAATCAACTACTGATTGGT 94279 Query 17959 TGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATA 18018 ||||||||||||| || || || || |||||||| || || || | || |||| ||| | Sbjct 94280 TGAAGTTGAATCCGTTTAGGTTGAATGCCATAGTAGAAATACCAAGAGCAGTAAACCAAA 94339 Query 18019 TGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAG 18078 | | | || ||||||||||| | |||||| || ||| | ||||| || || Sbjct 94340 TACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGAAGAGAACGAGAGTTGTTGAAAGAAG 94399 Query 18079 CATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTT 18138 | || |||||||| || | |||||||| || ||||| || ||||| || || || |||| Sbjct 94400 CGTATTGGAAGATTAGACGACCAAAGTAACCGTGAGCAGCTACAATGTTGTAAGTTTCTT 94459 Query 18139 CTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAA 18198 |||| || || || || || ||| ||| || || |||||| ||||| | || | Sbjct 94460 CTTCCTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTCTCAGTAGTTTCACGGATTA 94519 Query 18199 GTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTG 18258 | || |||||||| || ||||||||||||| ||| || | |||||||| || || | Sbjct 94520 GAGATGAAGTAACTAGTGAACCGTGCATAGCAGAGAACAATGAACCACCGAAAACACCAG 94579 Query 18259 CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACA 18318 ||||||| ||||| ||||| || ||||||||||| ||||| || ||||||||||||| || Sbjct 94580 CAACACCTAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACGATCA 94639 Query 18319 TGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAA 18378 |||| ||||| ||||| |||||||||||||||||||| |||||| ||||| || | Sbjct 94640 TGAAGTTGAATGTACCAGAGATACCAAGAGGCATACCATCTGAGAAAGAACCTTGACCGA 94699 Query 18379 AAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAA 18437 || || | || ||||| | || | |||||||| |||||||| || ||||| ||| Sbjct 94700 TTGGGTAGATGATGAATACAGCAGTA-GCAGCTGCAACTGGTGCAGAGTAAGCTACAGCG 94758 Query 18438 ATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCG 18497 ||||| || |||||||||| | || ||||||||||| || |||||||| | | Sbjct 94759 ATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCATTCACGACCCATGTATGAGCAG 94818 Query 18498 ATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 18557 || || | || |||||| | || || ||||| || || || ||||| || | ||| || Sbjct 94819 ATTCCAAGGAAGAAGTGGCAAACGATTAGTTGGTAAGGACCACCGTTGTAAAGCCATTCA 94878 Query 18558 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 18617 || || | ||||||||||| |||||||||||||| |||||||| |||||||| | || Sbjct 94879 TCAAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGTAGACCGATCGCGTTAGAAGTTGGT 94938 Query 18618 ACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGA 18677 || | || || || |||||||||||||| || || | | || || ||||||||||| Sbjct 94939 ACAACAGCACCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGATACAGGCTCACGG 94998 Query 18678 ATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCG 18737 |||||||| ||||| || ||||||||||| | ||| || || | || | | || ||| Sbjct 94999 ATACCATCGATGTCCACTGGAGGAGCAGCGATAAAAGCGATAATGAAAACAGAAGTTGCA 95058 Query 18738 GTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTA 18797 ||||| || | |||||||||||| || || ||||| || | ||| || ||||| | || Sbjct 95059 GTTAATAGAGTAGGGATCATAAGAACACCGAACCAACCGATGTATAGACGGTTCTCAGTG 95118 Query 18798 CTCGTAACCCAGTCACATAAACTTTCCCA 18826 || |||| ||| ||||| || | | |||| Sbjct 95119 CTTGTAATCCATTCACAGAAGCGTGCCCA 95147 >seq60 Length=599436 Score = 513 bits (568), Expect = 4e-141 Identities = 700/977 (72%), Gaps = 0/977 (0%) Strand=Plus/Plus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 || |||||||||| |||||||||||||| ||||| |||||||| ||||| | || | Sbjct 99611 GATGCTAAATCTAATGGGAAGTTATGAGCGTTACGTTCGTGCATTACTTCCATACCTAAA 99670 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 | || | ||| | | |||||||||||| || || | ||| || | |||| Sbjct 99671 TCTGCACGGTTAATGATGTCAGCCCATGTGTTTATAACACGACCTTCACTATCAACAACA 99730 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 |||||||||||||| || || || | || || |||||||| | || | || || Sbjct 99731 GATTGGTTGAAGTTAAAACCGTTTAAGTTGAATGCCATAGTACTTACACCTAAAGCTGTT 99790 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || | | || ||||| || || | ||||||||||| | || ||||| Sbjct 99791 AACCAAATCCCAACTACAGGCCATGCTGCAAGGAAGAAATGTAAAGCTCTAGAGTTGTTG 99850 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || |||||||| ||||| || | | |||||||| |||||||| || || || || || Sbjct 99851 AAACTAGCATATTGGAAAATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAA 99910 Query 18132 GTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCT 18191 || ||||||||||| || ||||| || || ||||| ||| |||| || | ||||| Sbjct 99911 GTTTCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAACAGATTCAACTTCGCTTGTTTCA 99970 Query 18192 CTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 18251 | ||| | ||||| || | | ||||||||||||| |||||| | |||||||| Sbjct 99971 CGAATTAAACTTGAAGTTACTAAAGATCCGTGCATAGCACTGAATAATGAACCACCGAAA 100030 Query 18252 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAAT 18311 || || |||||||| ||||||||| || ||||| | || || ||||| |||||||| Sbjct 100031 ACACCAGCAACACCAGCCATATGGAATGGGTGCATTAAAATGTTATGTTCAGCTTGGAAA 100090 Query 18312 ACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCT 18371 |||| |||||| || || ||||| |||||| | |||||||||||||||||||| ||| Sbjct 100091 ACGATCATGAAGTTAAACGTACCAGAAATACCTAATGGCATACCATCAGAGAAACTACCT 100150 Query 18372 TGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 || || | ||| ||||| | ||||||| | || ||||||||||| || || | || Sbjct 100151 TGACCGATAGGGTAAACTAAGAATACTGCAGATGCTGCTGCTACTGGAGCAGAGAATGCT 100210 Query 18432 ACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 || ||||||| || |||||||||| | || ||||||||||||| || ||||| || Sbjct 100211 ACGAAAATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCATTCACGACCCATCCAA 100270 Query 18492 GCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAAC 18551 || | || || | || ||||| || || | ||| || || || ||||| |||||| Sbjct 100271 CAAGCAACACCAATTAAGAAATGGAATACGATTAATTGGTAAGGACCACCGTTGTATAAC 100330 Query 18552 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 18611 ||||| || | | ||||||||||| |||||||||||||||| |||||||||||| || Sbjct 100331 CACTCTTCAATTGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCGATTGCGTTTGAA 100390 Query 18612 GACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGC 18671 || | | || || ||||||||||| || || | ||| | ||| | |||||| Sbjct 100391 CTAGGTATAACAGCACCACTGATGATGTTGTTACCGTATAATAAAGATCCAGCTACAGGC 100450 Query 18672 TCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTA 18731 ||||| |||||||| || || || || ||||| || | ||| || || | | | | Sbjct 100451 TCACGGATACCATCAATATCTACAGGCGGAGCTGCGATAAAAGCGATGATGTAACAAGAA 100510 Query 18732 GCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTG 18791 ||||| ||||| | | ||||||||| | |||||||| || | ||| | || || Sbjct 100511 GCTGCTGTTAATAACGTAGGGATCATTAAACAACCAAACCAACCAATGTATAAACGATTT 100570 Query 18792 TTTGTACTCGTAACCCA 18808 | ||||| |||| ||| Sbjct 100571 TCAGTACTAGTAATCCA 100587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151317084664808