Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq318 682 0.0 seq60 488 2e-133 >seq318 Length=132058 Score = 682 bits (756), Expect = 0.0 Identities = 734/971 (76%), Gaps = 0/971 (0%) Strand=Plus/Plus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || || ||||||||||| ||||||||||| ||||| ||||| ||||| || || | Sbjct 94147 TCAACTGACGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATA 94206 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 |||||||| |||||||| | ||| ||| |||| |||||||| || |||| | | | | Sbjct 94207 CCAAGGTTAGCACGGTTGATAATATCACCCCAAGTGTTGATAACACGTCCTTGTGAATCA 94266 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | |||||||| |||||||| || || | |||||| ||||| ||||| | ||||| Sbjct 94267 ACTACTGATTGGTTGAAGTTGAATCCGTTTAGGTTGAATGCCATAGTAGAAATACCAAGA 94326 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| |||||||||||| | ||| ||||| ||||| || ||||| |||||| ||| || Sbjct 94327 GCAGTAAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGAAGAGAACGAGAG 94386 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||| ||||||||||| || |||||||| || ||||||||||| ||||| Sbjct 94387 TTGTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGAGCAGCTACAATG 94446 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 |||||||| ||||| || ||||| |||||||||||| ||| ||| | | ||||| Sbjct 94447 TTGTAAGTTTCTTCTTCCTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTCTCAGTA 94506 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || ||||| || || || || || || || ||||||||||||||||||||| ||| Sbjct 94507 GTTTCACGGATTAGAGATGAAGTAACTAGTGAACCGTGCATAGCAGAGAACAATGAACCA 94566 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 || || || || || ||||| |||||||| || || |||||||| || ||||||||||| Sbjct 94567 CCGAAAACACCAGCAACACCTAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCT 94626 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 ||||| || | |||| ||||||| || || || || || | |||||| |||| || ||| Sbjct 94627 TGGAATACGATCATGAAGTTGAATGTACCAGAGATACCAAGAGGCATACCATCTGAGAAA 94686 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || || || | || || | | ||| |||||||| ||||| || || || |||||| Sbjct 94687 GAACCTTGACCGATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAG 94746 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121 || || ||| |||||| || | ||| |||| || | ||||||||| || || ||| Sbjct 94747 TAAGCTACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCATTCACGACCC 94806 Query 22122 ATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTG 22181 ||||| | ||| |||| || ||||||| | ||| | |||||| | ||||| |||||| Sbjct 94807 ATGTATGAGCAGATTCCAAGGAAGAAGTGGCAAACGATTAGTTGGTAAGGACCACCGTTG 94866 Query 22182 TACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCA 22241 || |||||||||||||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 94867 TAAAGCCATTCATCAAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGTAGACCGATCGCG 94926 Query 22242 TTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCG 22301 ||| | || || || || || || ||||||||||| || || | || || |||| Sbjct 94927 TTAGAAGTTGGTACAACAGCACCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGAT 94986 Query 22302 ACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAA 22361 || || || ||||| ||||||||||| || || || || | | ||| |||||||| ||| Sbjct 94987 ACAGGCTCACGGATACCATCGATGTCCACTGGAGGAGCAGCGATAAAAGCGATAATGAAA 95046 Query 22362 CAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGA 22421 || || || | | || || |||||||| || |||||||| || | || ||| Sbjct 95047 ACAGAAGTTGCAGTTAATAGAGTAGGGATCATAAGAACACCGAACCAACCGATGTATAGA 95106 Query 22422 CGGTTATTAGT 22432 ||||| | ||| Sbjct 95107 CGGTTCTCAGT 95117 >seq60 Length=599436 Score = 488 bits (540), Expect = 2e-133 Identities = 638/883 (72%), Gaps = 0/883 (0%) Strand=Plus/Plus Query 21483 GGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGA 21542 |||||||| || ||||| || || ||||| || || | || | | |||||||||| Sbjct 99626 GGGAAGTTATGAGCGTTACGTTCGTGCATTACTTCCATACCTAAATCTGCACGGTTAATG 99685 Query 21543 ATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTG 21602 ||||||||||| ||||| || || | || ||| | | | | ||||||||| ||||| Sbjct 99686 ATGTCAGCCCATGTGTTTATAACACGACCTTCACTATCAACAACAGATTGGTTGAAGTTA 99745 Query 21603 AAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACA 21662 ||||| || |||||||| ||||| ||| || || | || | |||||||| || || Sbjct 99746 AAACCGTTTAAGTTGAATGCCATAGTACTTACACCTAAAGCTGTTAACCAAATCCCAACT 99805 Query 21663 ACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGG 21722 |||||||| || ||||| |||||||| | | | || || || || |||||||||||| Sbjct 99806 ACAGGCCATGCTGCAAGGAAGAAATGTAAAGCTCTAGAGTTGTTGAAACTAGCATATTGG 99865 Query 21723 AAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGA 21782 || || | |||||||| || || |||||||| || || |||||||| ||||| ||||| Sbjct 99866 AAAATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGT 99925 Query 21783 CCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGAC 21842 || || |||||||| ||||| || | |||| | || |||||||| | || Sbjct 99926 CCGAATTTGTAACCGTAGTTAACAGATTCAACTTCGCTTGTTTCACGAATTAAACTTGAA 99985 Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCC 21902 || || | |||||||||||| ||| || ||||| || || || || ||||| Sbjct 99986 GTTACTAAAGATCCGTGCATAGCACTGAATAATGAACCACCGAAAACACCAGCAACACCA 100045 Query 21903 AGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTG 21962 ||| || || || ||||| | ||| || || ||||| ||||| || | |||| |||| Sbjct 100046 GCCATATGGAATGGGTGCATTAAAATGTTATGTTCAGCTTGGAAAACGATCATGAAGTTA 100105 Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAA 22022 || || || || || || || |||||| ||||||| ||| || || || | || ||| Sbjct 100106 AACGTACCAGAAATACCTAATGGCATACCATCAGAGAAACTACCTTGACCGATAGGGTAA 100165 Query 22023 ACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGC 22082 || | ||| || |||| || || || || ||||||||| | || || || ||||| || Sbjct 100166 ACTAAGAATACTGCAGATGCTGCTGCTACTGGAGCAGAGAATGCTACGAAAATCCAAGGA 100225 Query 22083 CTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATG 22142 | ||| |||| || |||||||||||||| || || ||||| || | || ||||| Sbjct 100226 CGCATACCTAAACGGTAGCTAAGTTCCCATTCACGACCCATCCAACAAGCAACACCAATT 100285 Query 22143 AGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTA 22202 | ||| ||||||||| | | |||| | ||||| |||||||| | ||| || |||| || | Sbjct 100286 AAGAAATGGAATACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCTTCAATTGAA 100345 Query 22203 GCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCT 22262 |||||||||||||||||||||||||| | ||||| || || || || | || || Sbjct 100346 GCAGCTTCCCAAATTGGGTAGAAGTGAATACCGATTGCGTTTGAACTAGGTATAACAGCA 100405 Query 22263 CCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCG 22322 || |||||||||||||| || || | || ||||| || || || ||||| ||||| Sbjct 100406 CCACTGATGATGTTGTTACCGTATAATAAAGATCCAGCTACAGGCTCACGGATACCATCA 100465 Query 22323 ATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAG 22365 || || ||||| || || | | ||| ||||| || |||||| Sbjct 100466 ATATCTACAGGCGGAGCTGCGATAAAAGCGATGATGTAACAAG 100508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146206729086960