Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq273 848 0.0 seq310 109 2e-19 >seq273 Length=166498 Score = 848 bits (940), Expect = 0.0 Identities = 1491/2145 (70%), Gaps = 86/2145 (4%) Strand=Plus/Plus Query 50308 CAAGTGGGTTTCGATGATCATGGCAATCGCCGCGATGACCGATGATTGGAACTTCCCTTT 50367 || ||| |||||||| | | | || ||||| | || ||| | | |||| || || Sbjct 145183 CAGGTGCGTTTCGATCACGCCGCCGATGGCCGCCAGGATCGAGGGGATGTACTTGCCCTT 145242 Query 50368 GAAGAAGTCCCCGCCCCGTGGATCCACGATGCCCTTCAGATCCTCAATGGCAAACCGCAC 50427 || || ||||||| || ||||| | || | |||||| || || | | || ||| Sbjct 145243 GATCCAGGCCCCGCCGCGCGGATCGAAGACGGCCTTCAACTCTTCGACCACGAAGGACAC 145302 Query 50428 ATCGCCGCCGCGCCGGAATATCGCGGTGATCAGCAGAGTCAGTGCAATGGTCCAAGC--- 50484 ||||| ||||||||||| | || |||||| | ||||| || | |||||| || Sbjct 145303 GTCGCCCCCGCGCCGGAACACGGCACTGATCATACGCGTCAGCGCCACGGTCCAGGCGAA 145362 Query 50485 -TGCGTCCTTCTGAGACTTGGTGTTGATGAACACCTCGAACGGCAGTTTTTCATCTTCGA 50543 ||| ||| | | ||||| |||||||| |||||||| || | | ||| Sbjct 145363 ATGC-TCCATGTT---CTTGGAATTGATGAAAACCTCGAAGGGACGGCGGCGGCCACCGA 145418 Query 50544 CCGTGATGTGGTTCACCGTGATGTAGATCGGCTCTT-GCA-TCCGGCCATACTTCAGCTT 50601 | |||||| ||| | ||| | ||||||| | || || || ||||| ||||||||| Sbjct 145419 CGATGATGTCGTTGATCGTCAGATAGATCGCATGTTCGCTGTCGGGCCA--CTTCAGCTT 145476 Query 50602 GTAGGTGCCACCCTCAAG-GTCATCAGGACGGGCCATAGG---CTGATCGTGCATGAG-- 50655 |||||| || || || ||| | || ||| ||| || ||| ||| |||| Sbjct 145477 GTAGGTATTGCCTTCCAGCGTCTGCGGG-CGGTCCAGCGGATCCTGCAGGTGGATGACAT 145535 Query 50656 ----GCCA---GTGGGGGTCCCTGCTAGTTCCGTGACCTCGGGCTTGTCATCGACGCTCA 50708 ||| ||||| || || | || |||| | | || || || Sbjct 145536 CGCCGCCTTCCGTGGGCATCGGCGCGGGATCTT---CCTCTTTCGAGGATTCCACCGACA 145592 Query 50709 GGACGCTGCCAGTGACCGCGTTGGGGCGGTATGTGGTGCATCCCTTACAACCGGACTCCC 50768 ||||| || || || |||| || ||||| || ||||| ||||| || |||| |||| Sbjct 145593 GGACGGACCCGGTCACGTCGTTCGGACGGTAGGTCGTGCAGCCCTTGCAGCCGGTGTCCC 145652 Query 50769 AAGCCATCATGTAGACATCCTTGAAGTCCTCAAAGCTGATGTCTTCGGGCAGGTTGATCG 50828 | || ||||||||| ||||||||||| |||||| ||||| ||||| |||||||| Sbjct 145653 AGGCTTCCATGTAGACGTCCTTGAAGTCGTCAAAGGAAATGTCCTCGGGGCAGTTGATCG 145712 Query 50829 TCTTTGAGATCGAACTGTCAATCCACCGCTGGGCCGCAGCCTGCATGACAATGTGAGCCT 50888 |||| |||||||| ||||| | ||| ||| ||||| |||||||| | ||| || Sbjct 145713 TCTTCGAGATCGAGCTGTCGACCCATTTCTGCGCCGCCGCCTGCATCTTGACGTGCTCCA 145772 Query 50889 CGGGGGTGAGGGTCTGGGCGTTGACGAACTGCGGTGGCAGGTTGTTCACATCGGGTGTGG 50948 |||| || ||||||||||||||||| | ||||| |||| Sbjct 145773 GCGGGGCCAGCGTCTGGGCGTTGACGAAATAGTCGGGCAG-----------CGGG----- 145816 Query 50949 GCTTC-CCGTTGTCGGCGCAGAAGGCGATGTATTGCTGAAGGGAATAGCTGTCCACCCGC 51007 || || || || || | | || | | ||| | || ||| | ||| | Sbjct 145817 GCGTCGCCCTTAACGTCAC-----GCCACAT----CTGCACGGCGTAGTCGGTGACCTTC 145867 Query 51008 TCAGGCCGCTTGGTG--CCGTCCTTTTCCAGAACCTTGCGGGTGTAGCTGTTCGCAAAGA 51065 || || | | | |||||||| | || |||||||||||||| | ||||||| Sbjct 145868 TCTT--CGGTGCGCGACCCGTCCTTCTGAAGCACCTTGCGGGTGTATTCATAGGCAAAGA 145925 Query 51066 CTGGTTCGATGCCGGATGACACGTTCCCGGCGTAGAGGCTGATGGTGCCGGTCGGCGCGA 51125 | || ||||| ||||| ||||||||||| || || || || || |||||||| | Sbjct 145926 CCGGCTCGATCCCGGAACTGACGTTCCCGGCATACAGCGAAATCGTCCCCGTCGGCGCAA 145985 Query 51126 TAGAGGTCAGCAGGGCGTTCCGAATACCATGTTCACGGATGGCGTCACGCACATCTTGAT 51185 || |||||||| || || || || |||||||| | ||| | ||||| || | | Sbjct 145986 CGGACGTCAGCAGCGCATTGCGGATGCCATGTTCGGCCACGGCTGCGCGCACGTCCTCGT 146045 Query 51186 CCATG--CT-CATCATGTTCTCACCGGCCAGATACTTGTCAGCATCAAACAGCGGGAACG 51242 |||| || |||| || | || ||||| || || ||||| |||||||| |||| Sbjct 146046 CCATCGCCTGCATCGTGC-CGGAC--GCCAGGTAAGCATCGGCATCGAACAGCGGAAACG 146102 Query 51243 CACCCTTCTCTTTGGCGAGATCCACGGACCCAAGATAAGCCGAACGGGCAATCTGGTGCA 51302 | ||||| || || || ||||| || || | ||||| ||| || || ||| | ||| Sbjct 146103 CGCCCTTTTCCTTCGCCAGATCGACCGAGGCCAGATAGGCCTCGCGCGCGATCAGACGCA 146162 Query 51303 TGATGTCATCGGTCATGCTG-GCCGCGTCATCGGTGCCATAGGTCAGGCCCAACATGATC 51361 | | | |||||| ||| ||||| || || | ||||||| ||| || | ||| | | Sbjct 146163 TCCAGGCTTCGGTC-TGCGCCGCCGCCTCGTCCGAGCCATAGCGCAGCCCGACCATCAGC 146221 Query 51362 AGCGCATCGGCCAGACCGGTGACACCCAGACCAAGGCGGCGTTTGTCGTGAGCCTCTTTG 51421 |||||||| |||||||||||||| |||||||| | |||||| ||| | | ||||| Sbjct 146222 AGCGCATCTGCCAGACCGGTGACGCCCAGACCGATGCGGCGCTTGGCCTCGGCCTCGCGC 146281 Query 51422 TCTTGGGCGGGCAGTGGGAACTTGGACGTGTCCACCACATTGTCCATCATGCGGATGGCG 51481 | || || || ||||| || || | || || |||||||||||| || | ||| Sbjct 146282 GCCTGCGCCTCAAGCGGGAAATTCGAGGCATCGACGGTATTGTCCATCATCCGCACGGCC 146341 Query 51482 GTGCGGACCAGCTTGTCCAGC--GCCTTCAGGTCGATGGTAGCGGCTTCGGTGAAGGCAT 51539 |||| ||||| ||| ||||| | | || ||| | || || || ||| | | Sbjct 146342 ATGCGCACCAGGTTGGCCAGCTTGGCCTC--GTCCAGCTGTGCTGCGTCCTCGAACGGGT 146399 Query 51540 ACTTGACCATGCGGGCCATGTTGATCGAACCCAGAAGACAGGCACCGTAGGGTGGCAGGG 51599 | ||||| || |||| ||||| ||| |||||||| ||||| || ||||| ||||| | Sbjct 146400 TCACCACCATCCGCGCCAAGTTGACCGAGCCCAGAAGGCAGGCCCCATAGGGCGGCAGCG 146459 Query 51600 GTTGTTCGCCGCAGGGGTTTGTGGCCGCGATGACCTCGCAATAGTTCAGGTTGTTCCGGT 51659 | ||||| ||||||||||| || || || ||| ||||||||| |||||||||| | Sbjct 146460 GCTGTTCCCCGCAGGGGTTGGTCGCGGCAATGGTTTCGCAATAGCTCAGGTTGTTGGCCT 146519 Query 51660 TATTGATCCGGTCGATGAACAGGACACCCGGCTCAGCAACATCATAGGTGTGCTTCATCA 51719 ||||| ||||||||||| | ||||||||||| || ||||||||| || ||| | Sbjct 146520 GGTTGATGCGGTCGATGAAGATCACACCCGGCTCGGCGTAATCATAGGTCGCCTGCATGA 146579 Query 51720 TGGCGTCCCACAATTCAGTGGCGCG---GACTCGGCT-ATACACCTTACCCTCAAACACC 51775 || || ||||| || ||||| || || | ||| ||||| || ||||| ||| Sbjct 146580 TGCGGTTCCACAGATC----GCGCGCCTGAAGCGTGTGATAGACCTTGCCGTCAAAGACC 146635 Query 51776 AGATCCCACATCTCATCGGCCTCTTTGGCCTTCATGAAAGCGTCGGTGATCAAGACGGAC 51835 || ||||| | | ||||||| ||||| |||||||| |||||||| || ||| ||| Sbjct 146636 AGGTCCCAGGACCCGTCGGCCTTCACGGCCTCCATGAAAGGGTCGGTGACCAGGACAGAC 146695 Query 51836 ATGTTGAACATCCGCAGCCGGTTCGGATCCGACTTGGCCGTGATGAAGTCTTTGATGTCG 51895 ||||||||||| ||||||||| |||||| |||||||| | |||||| | | | ||| Sbjct 146696 ATGTTGAACATGCGCAGCCGGGCCGGATCGGACTTGGCGGCGATGAATTGCTCCACGTCC 146755 Query 51896 GGGTGATCGCAACGCATTGTTGCCATCATCGCGCCACGGCGGGACCCGGCAGACATGATC 51955 ||||||||||| ||||| || |||||||||||||| ||||| || || || ||||||||| Sbjct 146756 GGGTGATCGCAGCGCATGGTCGCCATCATCGCGCCCCGGCGCGAGCCTGCGGACATGATC 146815 Query 51956 GTGCGACACATCGCATCCCAGACATCCATGAAAGACAGGGGACCAGAAGCATCCGCAGCA 52015 |||||||||||||| ||||||||||||||||| ||||| || || || |||||||| || Sbjct 146816 GTGCGACACATCGCGTCCCAGACATCCATGAAGGACAGCGGGCCCGAGGCATCCGCCGCC 146875 Query 52016 ACACCTTTGACGATTGCACCCTTGGGGCGGATGGTGCTGAAGTCATAGCCGATGCCGCCG 52075 || || || || ||||||||||| |||||||| ||| |||||||||||||||||| Sbjct 146876 ACGCCCTTCACATCCGCACCCTTGGGCCGGATGGTCGAGAAATCATAGCCGATGCCGCCG 146935 Query 52076 CCCTGTTGCATGGTCAGCGCAGCTTCCTTCAGCATGTCGAAGATGCCGCCCATGTCGTCT 52135 ||||| |||||||||||||| || || |||||||||||||| ||||||||||||| ||| Sbjct 146936 CCCTGCTGCATGGTCAGCGCGGCCTCTTTCAGCATGTCGAAAATGCCGCCCATGTTGTCG 146995 Query 52136 GGCACGGTCCCCATGACAAAGCAGTTGAAGAGGGTGACATTTCGTCCAGTCCCGGCCCCG 52195 || | || |||||||| || |||||||| || || || || || | || |||||||| Sbjct 146996 GGGATCGTGCCCATGACGAAACAGTTGAACAGCGTCACCTTGCGCGCGGTGCCGGCCCCT 147055 Query 52196 GCGGTGATCCGGCCAGCGGGCAGATACTTAAAATCTTCAAGGGCGTTGTAGAAGTCTTCT 52255 ||||||||||| || |||||||| ||| ||||| || || ||| ||||| ||| Sbjct 147056 GCGGTGATCCGCCCTGCGGGCAGGAACTGGAAATCCTCCAGCGCGCCATAGAACCGCTCT 147115 Query 52256 TCGCACTGGGGACGGATGTTGTCACCCTCACAAGCGGCAAGGTCCGTGGCAATTCGCAAC 52315 || || || | | | |||| | || || || ||| | || || || | Sbjct 147116 TCCCA--GGTGTC----GCTGTC-CTTTCCACCGCCGCCAGGGCGCGCGCGATCCGTCGC 147168 Query 52316 CATGTGTCTTCCACATCTTGGTCAATCGGGGTGCCGTCTTGCTGTTTGAAGCGATACTTA 52375 || ||||||| || | ||||| | || || || || ||| || || ||||| Sbjct 147169 CAGCTGTCTTCGACCGTGCGATCAATGGCCGTACCATCGGCCTCTTTCAAACGGTACTTC 147228 Query 52376 CTATCCCAAATCTGGGCGGCAATGGGTGCGCTGAAGCGAGTCATG 52420 ||||||| | ||| |||||||||| ||| ||||| |||||| Sbjct 147229 ATATCCCATACCTGTTCGGCAATGGGCGCGGCAAAGCGGGTCATG 147273 >seq310 Length=138217 Score = 109 bits (120), Expect = 2e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 43938 GTCGCGCTTGCGGATACCGATGATCTTGCGGATGACTTTGACATCGTATCCACGGCCTTT 43997 |||||||||||| | |||| | |||||| | || ||||| ||||||||||| || || Sbjct 54860 GTCGCGCTTGCGCAGGGCGATCAGCTTGCGCAGCACCTTGACGTCGTATCCACGCCCCTT 54919 Query 43998 GGCCTCAGCCATAATCTCTTTCTGGCCTTCAACGATGTCTTTCTTCTCAACCTCAAGCCG 44057 |||||| ||||| | ||||||||| || | ||| | |||||||| | || || || Sbjct 54920 GGCCTCTGCCATGACCTCTTTCTGTTGCTCGGCAATGGCCTTCTTCTCTTCGTCCAGGCG 54979 Query 44058 CTCATAGCGTTCGATGAACTGGCGCAGTTC 44087 ||| | ||||| | |||||||||||| || Sbjct 54980 CTCGAACCGTTCAACGAACTGGCGCAGCTC 55009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182142416713280