Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq318 654 0.0 seq60 639 2e-178 >seq318 Length=132058 Score = 654 bits (724), Expect = 0.0 Identities = 745/996 (75%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| | || || | ||| | |||||||||||| || || | || ||||||||||||||| Sbjct 94147 TCAACTGACGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATA 94206 Query 7942 CCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999 || | ||| || | ||| ||||| |||||||| || || | || | || Sbjct 94207 CCAAGGTTAGCACGGTTGATAATA--TCACCCCAAGTGTTGATAACACGTCCTTGTGAAT 94264 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 |||| ||||||||||| ||||| |||||||| ||||| |||||||| || ||||||| | Sbjct 94265 CAACTACTGATTGGTTGAAGTTGAATCCGTTTAGGTTGAATGCCATAGTAGAAATACCAA 94324 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTAC 8119 || ||| ||||||| || | |||||| | | ||| ||||||||||||||| | | Sbjct 94325 GAGCAGTAAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGAAGAGAACGAG 94384 Query 8120 TGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| || || || || |||||||||| | ||||||||| || |||||||| |||| Sbjct 94385 AGTTGTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGAGCAGCTACAA 94444 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239 | || || || |||||||| ||||| ||||| |||||| ||| || || | |||| Sbjct 94445 TGTTGTAAGTTTCTTCTTCCTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTCTCAG 94504 Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299 | || || | ||||||||| || ||||||| ||||||||||||||| ||| | ||| | Sbjct 94505 TAGTTTCACGGATTAGAGATGAAGTAACTAGTGAACCGTGCATAGCAGAGAACAATGAAC 94564 Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTG 8359 ||||||| | ||| || || ||| ||| ||||| || |||||||| ||||| ||||| | Sbjct 94565 CACCGAAAACACCAGCAACACCTAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAG 94624 Query 8360 CTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGA 8419 |||||||||||| ||||||||| || |||||||| ||||| |||||||| ||||| |||| Sbjct 94625 CTTGGAATACGATCATGAAGTTGAATGTACCAGAGATACCAAGAGGCATACCATCTGAGA 94684 Query 8420 ATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCAC 8479 | ||||| ||||| | ||| || | | ||| || || |||||| | ||||| ||| Sbjct 94685 AAGAACCTTGACCGATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAG 94744 Query 8480 TATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTAC 8539 || |||||| |||||| || | ||||||||| ||| | || | ||||| | | || Sbjct 94745 AGTAAGCTACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCATTCACGAC 94804 Query 8540 CCATGTA--AGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCC 8597 ||||||| ||||| ||||||| | ||||||| | | | | || || ||||| || Sbjct 94805 CCATGTATGAGCAG--ATTCCAAGGAAGAAGTGGCAAACGATTAGTTGGTAAGGACCACC 94862 Query 8598 GTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAAT 8657 ||| || | ||| ||||| | | |||||||||||||| || |||||||||| || || Sbjct 94863 GTTGTAAAGCCATTCATCAAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGTAGACCGAT 94922 Query 8658 AGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACC 8717 ||||| |||| ||| || |||||||||||||||||||||||||| || | | ||||| Sbjct 94923 CGCGTTAGAAGTTGGTACAACAGCACCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACC 94982 Query 8718 TGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGAT 8777 | ||||| ||||| ||||| ||||| || || || |||||||| ||||| || | || Sbjct 94983 AGATACAGGCTCACGGATACCATCGATGTCCACTGGAGGAGCAGCGATAAAAGCGATAAT 95042 Query 8778 AAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATA 8837 || || || |||| ||| | ||| ||||| ||||| || |||||||||| || Sbjct 95043 GAAAACAGAAGTTGCAGTTAATAGAGTAGGGATCATAAGAACACCGAACCAACCGATGTA 95102 Query 8838 AAGTCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 || | ||| | || ||||||| ||| || || || Sbjct 95103 TAGACGGTTCTCAGTGCTTGTAATCCATTCACAGAA 95138 >seq60 Length=599436 Score = 639 bits (708), Expect = 2e-178 Identities = 733/980 (75%), Gaps = 4/980 (0%) Strand=Plus/Plus Query 7887 AGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAA 7946 ||||||||| |||||||||||||| || || || | ||| ||||| |||||||||||||| Sbjct 99610 AGATGCTAAATCTAATGGGAAGTTATGAGCGTTACGTTCGTGCATTACTTCCATACCTAA 99669 Query 7947 GTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAAC 8006 | ||| | ||| | | |||| ||||||| || | ||| | | ||||||||| Sbjct 99670 ATCTGCACGGTTAATGATGTCAGCCCATGTGTTTATAACACGACCTTCACTATCAACAAC 99729 Query 8007 TGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGT 8066 |||||||| |||||||| ||||| | ||| |||||||| || | | ||| | || || Sbjct 99730 AGATTGGTTGAAGTTAAAACCGTTTAAGTTGAATGCCATAGTACTTACACCTAAAGCTGT 99789 Query 8067 TAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT 8126 |||||||| | || || || ||| || |||||||| || | | |||| |||||| Sbjct 99790 TAACCAAATCCCAACTACAGGCCATGCTGCAAGGAAGAAATGTAAAGCTCTAGAGTTGTT 99849 Query 8127 -AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTAT 8185 |||| | ||||| ||||| ||||| | ||||||||| ||||||||||| || || || | Sbjct 99850 GAAACTA-GCATATTGGAAAATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGT 99908 Query 8186 AGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCT 8245 | || ||||||||||| || || || ||||| ||||| ||| || |||| |||| | Sbjct 99909 AAGTTTCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAACAGATTCAACTTCGCTTGTTT 99968 Query 8246 CTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGA 8305 | | |||| | || || |||||||| ||||||||||||||||| | ||| ||||||| Sbjct 99969 CACGAATTAAACTTGAAGTTACTAAAGATCCGTGCATAGCACTGAATAATGAACCACCGA 100028 Query 8306 ACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGA 8365 | | ||| || || || ||||||||||| || ||||| | ||||||||| || ||||||| Sbjct 100029 AAACACCAGCAACACCAGCCATATGGAATGGGTGCATTAAAATGTTATGTTCAGCTTGGA 100088 Query 8366 ATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAAC 8425 | |||| ||||||||||||||||||||||||||||| ||||| ||||||||||| || Sbjct 100089 AAACGATCATGAAGTTAAACGTACCAGAAATACCTAATGGCATACCATCAGAGAAACTAC 100148 Query 8426 CCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATG 8485 | ||||| | || || |||||||| ||||| | || || | |||||||||| ||| Sbjct 100149 CTTGACCGATAGGGTAAACTAAGAATACTGCAGATGCTGCTGCTACTGGAGCAGAGAATG 100208 Query 8486 CTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCATG 8544 |||| | ||||| || | ||||||||| ||||| | ||| ||||| | | |||||| Sbjct 100209 CTACGAAAATCCAAGGACGCATACCTAAACGGTA-GCTAAGTTCCCATTCACGACCCATC 100267 Query 8545 TAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATAC 8604 || || || ||||| | ||| ||||| | | || || || ||||| ||||| || Sbjct 100268 CAACAAGCAACACCAATTAAGAAATGGAATACGATTAATTGGTAAGGACCACCGTTGTAT 100327 Query 8605 AACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTG 8664 |||||||| || | || |||||||||||||| || |||||||| | || || ||||| Sbjct 100328 AACCACTCTTCAATTGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCGATTGCGTTT 100387 Query 8665 GAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACA 8724 ||| || | ||||||||| |||||||||||| || || | || || || || ||| Sbjct 100388 GAACTAGGTATAACAGCACCACTGATGATGTTGTTACCGTATAATAAAGATCCAGCTACA 100447 Query 8725 GGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAA 8784 || ||||| ||||| || ||||| ||||| ||||| || ||||| || | ||| | ||| Sbjct 100448 GGCTCACGGATACCATCAATATCTACAGGCGGAGCTGCGATAAAAGCGATGATGTAACAA 100507 Query 8785 GTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTG 8844 | ||| || | ||| || ||| ||||||| | ||||||||||| | || | | Sbjct 100508 GAAGCTGCTGTTAATAACGTAGGGATCATTAAACAACCAAACCAACCAATGTATAAACGA 100567 Query 8845 TTGTTTGTACTTGTAACCCA 8864 || | ||||| |||| ||| Sbjct 100568 TTTTCAGTACTAGTAATCCA 100587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615856764859040